pycom13g07210

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
4766673 .. 4767518
846 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGCCTTTTCTCTACTTTCTCATTGACCTTCACACTCTCAAGTCTCTTCCTCCGGTTCCTTCGAGTTTGGAAGAGGTAAATGTTGCAAACAGCACCTCATTAGAAAGTGTCTCTGATATTTCAAACCTGCGAAACTTAGTGGAGCTGAAACTTACAAGTTGTGACAAAGTTGTCGGTATTCCGGGCCTTGAGTGCTTGAAATCCTTGGTGAGGTTGTATATATACGAGTGGTTGCAATGCTTCTACTTGAGGAAAAAACGGAATCTTAGCATGCTAGGAAACAAGATACCAGACTGGTTTTCTCAAGGTGCGGTTACATTCTCCGAAAGAAAAACGGCATTCGCAAAAGCGGCTGAAAAGTGGGGGATTCATTTTGTCTGTGAAGGTGATGATGAGTATGAGGGAGATGAAGAGTCATTAAATGAATGCCAGCAATCCTTGTCAGAAAAACTGGCCGCGGCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

156

Amino Acids

17.56

Weight (kDa)

5.11

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 135
AccII CGCG 1 cut(s) 458
AciI CCGC 4 cut(s) 311, 350, 456, 458
AcoI YGGCCR 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 2 cut(s) 123, 199
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 48, 115
AoxI GGCC 2 cut(s) 184, 453
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 220, 398
BceAI ACGGC 1 cut(s) 351
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 48, 115
BfaI CTAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 3 cut(s) 351, 456, 459
BlsI GCNGC 3 cut(s) 352, 457, 460
Bme1390I CCNGG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 183
BpuEI CTTGAG 4 cut(s) 23, 209, 268, 288
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 204, 456
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 299, 456
Bse3DI GCAATG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 204, 456
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 299, 456
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 186, 455
BsiSI CCGG 2 cut(s) 53, 182
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 48, 115
BsmI GAATGC 2 cut(s) 338, 431
BsnI GGCC 2 cut(s) 186, 455
BspACI CCGC 4 cut(s) 311, 350, 456, 458
BspANI GGCC 2 cut(s) 186, 455
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 242
BsrI ACTGG 2 cut(s) 299, 456
BssECI CCNNGG 2 cut(s) 204, 456
BssT1I CCWWGG 1 cut(s) 204
Bst6I CTCTTC 3 cut(s) 51, 66, 405
BstC8I GCNNGC 2 cut(s) 272, 431
BstDEI CTNAG 2 cut(s) 136, 266
BstDSI CCRYGG 1 cut(s) 456
BstENI CCTNNNNNAGG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 458
BstMAI GTCTC 2 cut(s) 48, 115
BstMWI GCNNNNNNNGC 2 cut(s) 192, 350
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 1 cut(s) 458
BsuRI GGCC 2 cut(s) 186, 455
BtgI CCRYGG 1 cut(s) 456
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 272, 431
Cfr13I GGNCC 1 cut(s) 184
Cfr42I CCGCGG 1 cut(s) 459
CviAII CATG 1 cut(s) 271
CviJI RGCY 5 cut(s) 145, 186, 353, 455, 461
CviKI_1 RGCY 5 cut(s) 145, 186, 353, 455, 461
DdeI CTNAG 2 cut(s) 136, 266
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 3 cut(s) 51, 66, 405
EarI CTCTTC 3 cut(s) 51, 66, 405
Eco130I CCWWGG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 219, 221, 223, 272, 399
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 351, 456, 459
Fsp4HI GCNGC 3 cut(s) 351, 456, 459
FspBI CTAG 1 cut(s) 275
GluI GCNGC 3 cut(s) 351, 456, 459
HaeIII GGCC 2 cut(s) 186, 455
HapII CCGG 2 cut(s) 53, 182
Hin1II CATG 1 cut(s) 274
HinfI GANTC 3 cut(s) 262, 367, 413
HpaII CCGG 2 cut(s) 53, 182
HphI GGTGA 2 cut(s) 220, 398
Hpy188I TCNGA 3 cut(s) 115, 325, 445
HpyAV CCTTC 3 cut(s) 38, 69, 377
HpyCH4V TGCA 2 cut(s) 86, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 350
HpyF3I CTNAG 2 cut(s) 136, 266
Hsp92II CATG 1 cut(s) 274
KspI CCGCGG 1 cut(s) 459
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 66, 140, 195, 280, 303, 437, 443
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 161, 313
MboII GAAGA 3 cut(s) 38, 83, 422
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 6 cut(s) 60, 67, 106, 204, 243, 394
MseI TTAA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 2 cut(s) 53, 182
MspR9I CCNGG 1 cut(s) 183
Mva1269I GAATGC 2 cut(s) 338, 431
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 192, 350
NciI CCSGG 1 cut(s) 183
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PctI GAATGC 2 cut(s) 338, 431
PfeI GAWTC 2 cut(s) 262, 367
PkrI GCNGC 3 cut(s) 352, 457, 460
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 184
SacII CCGCGG 1 cut(s) 459
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 3 cut(s) 351, 456, 459
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 183
SetI ASST 8 cut(s) 30, 78, 98, 129, 147, 215, 310, 388
Sfr303I CCGCGG 1 cut(s) 459
SgrBI CCGCGG 1 cut(s) 459
SmlI CTYRAG 4 cut(s) 38, 188, 247, 303
SmoI CTYRAG 4 cut(s) 38, 188, 247, 303
SphI GCATGC 1 cut(s) 274
SsiI CCGC 4 cut(s) 311, 350, 456, 458
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 1 cut(s) 62
TauI GCSGC 3 cut(s) 353, 458, 461
TfiI GAWTC 2 cut(s) 262, 367
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 359, 423, 438
TspGWI ACGGA 1 cut(s) 274
XagI CCTNNNNNAGG 1 cut(s) 208
XceI RCATGY 1 cut(s) 274
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.