pycom13g07490

response to light intensity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
4974327 .. 4974689
363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGAGCTGGGCTAGTGTAACTCCGCTTCTATCACTACCTCCTCCAAAGCTGCACCCTTCCTCCTCCTTCCTCTCTCCTTCTTGGTCGACGTCTTCGATTCCAAGTGTTCGGGTTTTAACAACCAGTAGCATACACTTCTCTTCTACTTCGCCATTTTTGTCGTTAAGAAAGCAGCAGATATGCAGAGCAGCGGGCGAATACAAATTTCCCGACCCAATTCCCGAGTTCGCTGATTCCGTAAGTTTTTGTGTAAGTTACTCGTTAGTTTTCCCAAAAGATCTATTTGTCGATTCTTCGGGTGCAGGAGACAGAAAAGTTGAGGACCCATCTCTTGAACAAGCTCTCCCAGAAAGAAACGTATGA

Protein Analysis

121

Amino Acids

13.1

Weight (kDa)

6.05

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 86
AciI CCGC 2 cut(s) 23, 191
AcsI RAATTY 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 327, 359
AluBI AGCT 3 cut(s) 6, 49, 341
AluI AGCT 3 cut(s) 6, 49, 341
Alw26I GTCTC 1 cut(s) 300
Ama87I CYCGRG 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 49, 172, 188
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 36, 184, 200
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 277
BisI GCNGC 3 cut(s) 50, 173, 189
BlsI GCNGC 3 cut(s) 51, 174, 190
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 89
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 327, 357
Bse1I ACTGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 30, 52
BseXI GCAGC 3 cut(s) 36, 184, 200
BseYI CCCAGC 1 cut(s) 6
BsgI GTGCAG 2 cut(s) 35, 321
BsiHKCI CYCGRG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 2 cut(s) 23, 191
BspLI GGNNCC 1 cut(s) 324
BsrI ACTGG 1 cut(s) 123
BssMI GATC 1 cut(s) 277
BssNI GRCGYC 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 193
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 36, 184, 200
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 322
CviJI RGCY 4 cut(s) 6, 11, 49, 341
CviKI_1 RGCY 4 cut(s) 6, 11, 49, 341
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 322
FaiI YATR 3 cut(s) 131, 181, 361
FauI CCCGC 1 cut(s) 184
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 50, 173, 189
Fsp4HI GCNGC 3 cut(s) 50, 173, 189
FspBI CTAG 1 cut(s) 12
GluI GCNGC 3 cut(s) 50, 173, 189
GsaI CCCAGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 3 cut(s) 97, 233, 290
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 3 cut(s) 209, 221, 332
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 3 cut(s) 66, 76, 87
HpyCH4IV ACGT 2 cut(s) 89, 357
HpyCH4V TGCA 3 cut(s) 52, 183, 302
HpySE526I ACGT 2 cut(s) 89, 357
Hsp92I GRCGYC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 277
LpnPI CCDG 2 cut(s) 136, 288
Lsp1109I GCAGC 3 cut(s) 36, 184, 200
MaeI CTAG 1 cut(s) 12
MaeII ACGT 2 cut(s) 89, 357
MaeIII GTNAC 2 cut(s) 16, 254
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 3 cut(s) 84, 132, 285
MflI RGATCY 1 cut(s) 277
MluCI AATT 2 cut(s) 203, 216
MnlI CCTC 6 cut(s) 48, 51, 70, 73, 80, 313
MseI TTAA 2 cut(s) 116, 164
MspA1I CMGCKG 1 cut(s) 191
NdeII GATC 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 234
PfeI GAWTC 3 cut(s) 97, 233, 290
PkrI GCNGC 3 cut(s) 51, 174, 190
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 322
PspPPI RGGWCCY 1 cut(s) 322
PsuI RGATCY 1 cut(s) 277
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 116, 164
SatI GCNGC 3 cut(s) 50, 173, 189
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 322
SetI ASST 6 cut(s) 8, 40, 51, 92, 343, 360
SinI GGWCC 1 cut(s) 322
Sse9I AATT 2 cut(s) 203, 216
SsiI CCGC 2 cut(s) 23, 191
SspMI CTAG 1 cut(s) 12
TaiI ACGT 2 cut(s) 92, 360
TaqI TCGA 3 cut(s) 86, 95, 288
TasI AATT 2 cut(s) 203, 216
TfiI GAWTC 3 cut(s) 97, 233, 290
Tru1I TTAA 2 cut(s) 116, 164
Tru9I TTAA 2 cut(s) 116, 164
TseI GCWGC 3 cut(s) 49, 172, 188
TspGWI ACGGA 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 1 cut(s) 12
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.