pycom13g07760

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
5129378 .. 5130583
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
ATGTACCCCCCCCCCCCCGCGCCCAAATCATATTATTTAGGGTTTTTTATTTTATTTTTCATCACCTGCAACACTGTCCAAGTCCAAGACAAGAAGCACATGTCAAAGACTCAAATGGGCTCCGTTAATGGCAGATTTTCCAGTTTTTCAGACCCAGAAATGCCTGGCTCTGAAGATTTCCAGAGACAATTACAGCAGCTCTTCCACCTTCACGATTCCGGCTTAGATCAAGCTTTCATTGATGCTCTCCCTGTGTTCCTTTACAAAGAGATAAAGGGTTTGAAAGAACCATTTGATTGTCCAGTTTGTCTCTGTGAGTTTTGTGAGAACGATCAGCTGAGATTGCTCCCAGCTTGCAGTCATGCTTTTCACATTGATTGCATCGACACATGGTTGCTGTCTAATTCGACTTGCCCTCTTTGTAGAGGAACCCTCTACACGCCAGGGGTTGCTATCGAAAATCCGGTTTTCGATTTTGATGATCGATCGAACAAGATGGTTCTTTGGGAAATGGAGGAAATGGGGTTGGTCAAAAGTCTGCAGAGAATGAGATTGCTGGTGAGAAGAAGTTGTTTTCTGTGA

Protein Analysis

194

Amino Acids

22.25

Weight (kDa)

5.5

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 98 - 142 2.8e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 99 - 142 9.2e-14 Ring finger domain
zf-RING_11 PF17123 99 - 128 2.7e-08 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 2 cut(s) 163, 442
AluBI AGCT 4 cut(s) 199, 233, 337, 353
AluI AGCT 4 cut(s) 199, 233, 337, 353
Alw26I GTCTC 2 cut(s) 178, 314
ApeKI GCWGC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 55, 571
BanII GRGCYC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 490
BciT130I CCWGG 2 cut(s) 165, 444
BcoDI GTCTC 2 cut(s) 178, 314
BfmI CTRYAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 165, 444
BmiI GGNNCC 2 cut(s) 121, 430
BmrFI CCNGG 2 cut(s) 165, 444
BmsI GCATC 2 cut(s) 232, 390
BplI GAGNNNNNCTC 2 cut(s) 417, 449
Bsa29I ATCGAT 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 463
Bse1I ACTGG 2 cut(s) 141, 302
BseBI CCWGG 2 cut(s) 165, 444
BseCI ATCGAT 1 cut(s) 484
BseDI CCNNGG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 141, 302
BseXI GCAGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 484
BsiEI CGRYCG 1 cut(s) 488
BsiSI CCGG 2 cut(s) 219, 464
BsmAI GTCTC 2 cut(s) 178, 314
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 4 cut(s) 226, 331, 481, 485
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 484
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 121, 430
BspMAI CTGCAG 1 cut(s) 543
BspMI ACCTGC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 206
BsrI ACTGG 2 cut(s) 141, 302
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 4 cut(s) 226, 331, 481, 485
Bst2UI CCWGG 2 cut(s) 165, 444
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 223, 338
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 4 cut(s) 229, 334, 484, 488
BstMAI GTCTC 2 cut(s) 178, 314
BstMBI GATC 4 cut(s) 226, 331, 481, 485
BstMCI CGRYCG 1 cut(s) 488
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNI CCWGG 2 cut(s) 165, 444
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 163, 442
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 484
BsuTUI ATCGAT 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 484
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 100, 362, 390
CviJI RGCY 7 cut(s) 120, 168, 199, 222, 233, 337, 353
CviKI_1 RGCY 7 cut(s) 120, 168, 199, 222, 233, 337, 353
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 223, 338
DpnI GATC 4 cut(s) 228, 333, 483, 487
DpnII GATC 4 cut(s) 226, 331, 481, 485
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 163, 442
EcoT38I GRGCYC 1 cut(s) 122
FaeI CATG 3 cut(s) 103, 365, 393
FaiI YATR 4 cut(s) 31, 101, 363, 391
FatI CATG 3 cut(s) 99, 361, 389
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 197
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 197
GsaI CCCAGC 1 cut(s) 353
HapII CCGG 2 cut(s) 219, 464
HhaI GCGC 1 cut(s) 22
Hin1II CATG 3 cut(s) 103, 365, 393
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 2 cut(s) 109, 215
HpaII CCGG 2 cut(s) 219, 464
HphI GGTGA 2 cut(s) 55, 571
Hpy188I TCNGA 2 cut(s) 151, 172
Hpy188III TCNNGA 2 cut(s) 181, 212
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 69, 357, 381, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 2 cut(s) 223, 338
Hsp92II CATG 3 cut(s) 103, 365, 393
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 4 cut(s) 226, 331, 481, 485
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 125, 351
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 232, 390
MalI GATC 4 cut(s) 228, 333, 483, 487
MboI GATC 4 cut(s) 226, 331, 481, 485
MboII GAAGA 3 cut(s) 185, 193, 576
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 188, 403
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 4 cut(s) 419, 426, 443, 508
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 2 cut(s) 219, 464
MspR9I CCNGG 2 cut(s) 165, 444
MvaI CCWGG 2 cut(s) 165, 444
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 343
NdeII GATC 4 cut(s) 226, 331, 481, 485
NlaIII CATG 3 cut(s) 103, 365, 393
NlaIV GGNNCC 2 cut(s) 121, 430
NspI RCATGY 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 74
PciI ACATGT 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 198
Ple19I CGATCG 1 cut(s) 488
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PscI ACATGT 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 163, 442
PspFI CCCAGC 1 cut(s) 349
PspGI CCWGG 2 cut(s) 163, 442
PspN4I GGNNCC 2 cut(s) 121, 430
PstI CTGCAG 1 cut(s) 543
PvuI CGATCG 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 4 cut(s) 226, 331, 481, 485
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 165, 444
SduI GDGCHC 1 cut(s) 122
SetI ASST 6 cut(s) 68, 201, 210, 235, 339, 355
SfaNI GCATC 2 cut(s) 232, 390
SfcI CTRYAG 1 cut(s) 539
Sse9I AATT 2 cut(s) 188, 403
SsiI CCGC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 163, 442
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 6 cut(s) 384, 407, 456, 471, 484, 488
TasI AATT 2 cut(s) 188, 403
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 49, 226
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 79
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.