Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5429653 .. 5432194

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGGGCACTGATTGGACATACAATGTCACCCGCAGGCTTACCTCACCCCTGCACATTCACGCGTTGGTTCAGAGCTTCCGTCTCCTTCTCTCTCTCTCCTTCGATCTCCATCTTCATCGAAGGGATCCGCAGCCAGAAATGGGGCTTACATTCACGAAGCTTTTCAGCCGGCTCTTTGCCAAGAAGGAGATGCGAATTCTGATGGTTGGTCTTGATGCCGCCGGTAAGACCACCATCCTCTACAAGCTCAAGCTTGGTGAGATCGTCACAACCATTCCCACCATCGGGTTTAATGTGGAGACCGTGGAGTACAAGAACATCAGCTTCACTGTCTGGGATGTCGGGGGTCAGGACAAGATCCGACCATTGTGGAGGCACTACTTCCAAAACACACAGGGTCTTATCTTTGTTGTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCAAGGGACGAATTGCATAGGATGTTGAATGAGGATGAACTGCGTGATGCTGTGTTGCTCGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATCACTGATAAGCTTGGCCTGCACTCTCTGAGACAGCGTCACTGGTACATTCAGAGCACCTGTGCAACCTCTGGGGAGGGTCTATATGAGGGGCTCGATTGGCTCTCCAACAACATTGCTAACAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006471 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0019538 GO:0033036 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

229

Amino Acids

26.22

Weight (kDa)

7.11

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	52 - 224	2.8e-81	ADP-ribosylation factor family
SRPRB	PF09439	63 - 190	9.4e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	66 - 176	1.5e-13	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	66 - 220	1.1e-11	Ras family
Gtr1_RagA	PF04670	66 - 188	3.2e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	92 - 158	1.3e-09	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	4 cut(s)	5, 34, 131, 222
AclWI	GGATC	3 cut(s)	122, 135, 355
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	2 cut(s)	314, 602
AfiI	CCNNNNNNNGG	3 cut(s)	143, 287, 288
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	475
AluBI	AGCT	6 cut(s)	78, 163, 250, 256, 327, 568
AluI	AGCT	6 cut(s)	78, 163, 250, 256, 327, 568
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	4 cut(s)	89, 296, 426, 580
AlwI	GGATC	3 cut(s)	122, 135, 355
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	2 cut(s)	133, 548
ApoI	RAATTY	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	22, 39, 272
BaeGI	GKGCMC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	145, 535
BccI	CCATC	4 cut(s)	120, 199, 245, 293
BcoDI	GTCTC	4 cut(s)	89, 296, 426, 580
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	3 cut(s)	134, 222, 549
BlsI	GCNGC	3 cut(s)	135, 223, 550
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	3 cut(s)	183, 208, 484
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	111
BsaI	GGTCTC	2 cut(s)	296, 426
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 287, 288
Bse118I	RCCGGY	2 cut(s)	171, 224
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	3 cut(s)	430, 546, 669
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	4 cut(s)	237, 346, 474, 487
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	143, 287, 288
BseMI	GCAATG	3 cut(s)	430, 546, 669
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	145, 535
BsgI	GTGCAG	2 cut(s)	38, 560
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	172, 225
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	143, 287, 288
BsmAI	GTCTC	4 cut(s)	89, 296, 426, 580
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	573
Bso31I	GGTCTC	2 cut(s)	296, 426
Bsp1286I	GDGCHC	3 cut(s)	11, 614, 651
Bsp143I	GATC	5 cut(s)	106, 127, 264, 360, 526
BspACI	CCGC	4 cut(s)	5, 34, 131, 222
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	1 cut(s)	576
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	3 cut(s)	122, 135, 355
BspTNI	GGTCTC	2 cut(s)	296, 426
BsrDI	GCAATG	3 cut(s)	430, 546, 669
BsrFI	RCCGGY	2 cut(s)	171, 224
BsrI	ACTGG	1 cut(s)	602
BssAI	RCCGGY	2 cut(s)	171, 224
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	5 cut(s)	106, 127, 264, 360, 526
Bst4CI	ACNGT	3 cut(s)	307, 334, 437
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	7, 38, 173, 575
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	4 cut(s)	237, 346, 474, 487
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	5 cut(s)	109, 130, 267, 363, 529
BstMAI	GTCTC	4 cut(s)	89, 296, 426, 580
BstMBI	GATC	5 cut(s)	106, 127, 264, 360, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	545, 574, 655, 680
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	145, 535
BstX2I	RGATCY	3 cut(s)	127, 360, 526
BstYI	RGATCY	3 cut(s)	127, 360, 526
BsuRI	GGCC	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	237, 346, 474, 487
BtsIMutI	CAGTG	4 cut(s)	9, 330, 558, 595
Cac8I	GCNNGC	4 cut(s)	7, 38, 173, 575
Cfr10I	RCCGGY	2 cut(s)	171, 224
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	313, 601
CviQI	GTAC	2 cut(s)	313, 601
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	5 cut(s)	108, 129, 266, 362, 528
DpnII	GATC	5 cut(s)	106, 127, 264, 360, 526
Eco24I	GRGCYC	1 cut(s)	651
Eco31I	GGTCTC	2 cut(s)	296, 426
EcoRI	GAATTC	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	651
Esp3I	CGTCTC	1 cut(s)	89
FaiI	YATR	4 cut(s)	22, 465, 640, 642
FaqI	GGGAC	1 cut(s)	467
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	3 cut(s)	134, 222, 549
FokI	GGATG	4 cut(s)	224, 353, 481, 494
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	3 cut(s)	134, 222, 549
GluI	GCNGC	3 cut(s)	134, 222, 549
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	2 cut(s)	172, 225
HgaI	GACGC	1 cut(s)	581
HindIII	AAGCTT	3 cut(s)	161, 254, 566
HpaII	CCGG	2 cut(s)	172, 225
HphI	GGTGA	3 cut(s)	22, 39, 272
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	5 cut(s)	75, 204, 365, 585, 609
Hpy188III	TCNNGA	3 cut(s)	157, 215, 353
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	4 cut(s)	98, 112, 117, 181
HpyCH4III	ACNGT	3 cut(s)	307, 334, 437
HpyCH4V	TGCA	5 cut(s)	55, 463, 539, 577, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	545, 574, 655, 680
HpyF3I	CTNAG	1 cut(s)	584
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
Kzo9I	GATC	5 cut(s)	106, 127, 264, 360, 526
Lsp1109I	GCAGC	2 cut(s)	145, 535
LweI	GCATC	3 cut(s)	183, 208, 484
MaeIII	GTNAC	3 cut(s)	28, 268, 593
MalI	GATC	5 cut(s)	108, 129, 266, 362, 528
MboI	GATC	5 cut(s)	106, 127, 264, 360, 526
MboII	GAAGA	2 cut(s)	107, 521
MflI	RGATCY	3 cut(s)	127, 360, 526
MhlI	GDGCHC	3 cut(s)	11, 614, 651
MluCI	AATT	2 cut(s)	198, 458
MluI	ACGCGT	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	388, 687
MnlI	CCTC	8 cut(s)	55, 251, 369, 439, 472, 625, 634, 637
MroNI	GCCGGC	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	172, 225
Mva1269I	GAATGC	1 cut(s)	550
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	545, 574, 655, 680
NaeI	GCCGGC	1 cut(s)	173
NdeII	GATC	5 cut(s)	106, 127, 264, 360, 526
NgoMIV	GCCGGC	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	3 cut(s)	28, 268, 593
PctI	GAATGC	1 cut(s)	550
PdiI	GCCGGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	164
PflFI	GACNNNGTC	1 cut(s)	591
PkrI	GCNGC	3 cut(s)	135, 223, 550
PspN4I	GGNNCC	1 cut(s)	129
PsuI	RGATCY	3 cut(s)	127, 360, 526
PsyI	GACNNNGTC	1 cut(s)	591
RsaI	GTAC	2 cut(s)	314, 602
RsaNI	GTAC	2 cut(s)	313, 601
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	3 cut(s)	134, 222, 549
Sau3AI	GATC	5 cut(s)	106, 127, 264, 360, 526
SduI	GDGCHC	3 cut(s)	11, 614, 651
SetI	ASST	9 cut(s)	47, 80, 165, 252, 258, 329, 570, 617, 626
SfaNI	GCATC	3 cut(s)	183, 208, 484
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	198, 458
SsiI	CCGC	4 cut(s)	5, 34, 131, 222
TaaI	ACNGT	3 cut(s)	307, 334, 437
TaqI	TCGA	3 cut(s)	105, 121, 651
TasI	AATT	2 cut(s)	198, 458
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	4 cut(s)	16, 337, 565, 602
TseFI	GTSAC	3 cut(s)	28, 268, 593
TseI	GCWGC	2 cut(s)	133, 548
Tsp45I	GTSAC	3 cut(s)	28, 268, 593
TspDTI	ATGAA	3 cut(s)	107, 498, 557
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	16, 337, 565, 602
Tth111I	GACNNNGTC	1 cut(s)	591
XapI	RAATTY	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.