Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5557563 .. 5557983

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGCTTCGCTCTTCCGTTCTCAGCCGGTCGGCGCCTACCCAGTTTTCGGTTCAGACGCAGTCCGGTCCGGTCCTGCAGGACCTCCACCGCATTGCCCGTCTATGATAACCATCGAATATGGAAAAGATGGCAGTTTCGTGGAGCGGAGCAAAAATGGGAGAGAGTGTGTTGGATTTTTGCAGTGGAAATGGGGATTTAGCGTTTCTCTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

72

Amino Acids

7.69

Weight (kDa)

8.77

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	2 cut(s)	89, 145
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	66, 71, 80
AvaII	GGWCC	3 cut(s)	66, 71, 80
BanI	GGYRCC	1 cut(s)	32
BccI	CCATC	2 cut(s)	119, 122
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	36
Bme18I	GGWCC	3 cut(s)	66, 71, 80
BmgT120I	GGNCC	3 cut(s)	66, 71, 80
BmiI	GGNNCC	1 cut(s)	34
BmrI	ACTGGG	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	63, 68
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	110
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	26, 64, 69
BslI	CCNNNNNNNGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	89, 145
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMCI	CGRYCG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	66, 71, 80
CpoI	CGGWCCG	1 cut(s)	66
CseI	GACGC	1 cut(s)	65
CspI	CGGWCCG	1 cut(s)	66
CviJI	RGCY	2 cut(s)	5, 25
CviKI_1	RGCY	2 cut(s)	5, 25
DdeI	CTNAG	1 cut(s)	21
DinI	GGCGCC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	3 cut(s)	66, 71, 80
EcoO109I	RGGNCCY	1 cut(s)	80
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaiI	YATR	2 cut(s)	104, 120
GlaI	GCGC	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	36
HapII	CCGG	3 cut(s)	26, 64, 69
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	3 cut(s)	26, 64, 69
Hpy188I	TCNGA	2 cut(s)	55, 215
HpyCH4V	TGCA	2 cut(s)	77, 181
HpyF3I	CTNAG	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	142, 147
LpnPI	CCDG	6 cut(s)	39, 54, 63, 77, 82, 87
MbiI	CCGCTC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	4
Mly113I	GGCGCC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	1 cut(s)	93
MspI	CCGG	3 cut(s)	26, 64, 69
NarI	GGCGCC	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	59
PluTI	GGCGCC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	3 cut(s)	66, 71, 80
PspPPI	RGGWCCY	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	59
Rsr2I	CGGWCCG	1 cut(s)	66
RsrII	CGGWCCG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	17
Sau96I	GGNCC	3 cut(s)	66, 71, 80
SbfI	CCTGCAGG	1 cut(s)	79
SdaI	CCTGCAGG	1 cut(s)	79
SetI	ASST	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	75
SfoI	GGCGCC	1 cut(s)	34
SgeI	CNNG	8 cut(s)	38, 53, 76, 81, 86, 90, 109, 151
SinI	GGWCC	3 cut(s)	66, 71, 80
Sse8387I	CCTGCAGG	1 cut(s)	79
SsiI	CCGC	2 cut(s)	89, 145
SspDI	GGCGCC	1 cut(s)	32
TaqI	TCGA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	188
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	3 cut(s)	66, 71, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.