Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5717638 .. 5719344

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCCTGATCCAGATAGGTGGCCTTCGTCGAAAGATGGGACAGGGTTCACTGAAGTGGCAGCATTTGTACATAGCTTCGGTCTGAAATTTGGGATCCATGTCATGAGAGGAATAAGTACACAGGCATTTGATGCGAACACCAAGATCTTGGACGTCAGAACGGTACTGCTACTTAATCGCCCCATGACTCTCATTTTCCTTGTCATTATATTTTACATAAGTTTGGAGGATGAATCGTATAACGGGTCTCCTTATGAAGAGGGTGGAAGACAATGGACTGCAAAAGATATAGGGATCCCGGACAGGAGGTGCGCATGGATGGACAAGGGATTCATGAGTGTGAATGTCGAGTTGGATGCCGGAAAGGCCTTCTTGAGGTCACTCTACTACCAGTATGCTGACTGGGGTGTTGATTTTGAAACGATGTATATTTTCCAGTATCTGCAGCAACTGCATGCACTTGGGCAACCGCCTATATTGTATTCTCTATCTCCCGGAACCAGTGCAACGCCTGATATGGCCAAGCCTATAAATGGGATGGTCAACATGTACCGTATAACTGGGGATGATTGGGATTCATGGGGAGATATTCTAGCCCATTTTGATGTAGCCAGGGATTTTGCTGCTGCTAATATGATAGGAGCCAAAGGCATGCTGGGGAAGTCATGGCCTGACTTAGATATGCTACCGTTGGGATGGCTTAGTGCACCAGAAACAAATGACGGTCCACACAGATGGTCGAATCTCAATTTAGATGAGCAAAGAACACAGGTGCGTACATGGACAAGTTCGTTTTTTAAGTCCTCGATTTTCCCTGAGCAATCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005994 GO:0005995 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006672 GO:0006677 GO:0006687 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015925 GO:0016042 GO:0016052 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019377 GO:0030149 GO:0034641 GO:0043603 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044262 GO:0044275 GO:0044424 GO:0044464 GO:0046352 GO:0046466 GO:0046477 GO:0046479 GO:0046514 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Melibiase_2

Protein Analysis

277

Amino Acids

31.27

Weight (kDa)

4.91

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
Acc16I	TGCGCA	1 cut(s)	313
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	5 cut(s)	2, 88, 101, 289, 302
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	5 cut(s)	69, 118, 165, 551, 778
AfiI	CCNNNNNNNGG	2 cut(s)	375, 533
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	5 cut(s)	2, 88, 101, 289, 302
AlwNI	CAGNNNCTG	2 cut(s)	442, 451
AoxI	GGCC	4 cut(s)	20, 366, 519, 668
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	4 cut(s)	59, 445, 623, 626
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	725
AsuC2I	CCSGG	2 cut(s)	299, 495
AvaII	GGWCC	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	709
BalI	TGGCCA	1 cut(s)	521
BamHI	GGATCC	2 cut(s)	93, 294
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	4 cut(s)	71, 457, 610, 613
BccI	CCATC	5 cut(s)	29, 313, 532, 690, 729
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	299, 495
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	443
BglI	GCCNNNNNGGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	4 cut(s)	60, 446, 624, 627
BlsI	GCNGC	4 cut(s)	61, 447, 625, 628
Bme1390I	CCNGG	3 cut(s)	299, 495, 613
Bme18I	GGWCC	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	4 cut(s)	95, 296, 499, 643
BmrFI	CCNGG	3 cut(s)	299, 495, 613
BmrI	ACTGGG	2 cut(s)	412, 570
BmsI	GCATC	2 cut(s)	121, 346
BmuI	ACTGGG	2 cut(s)	412, 570
BpiI	GAAGAC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	2 cut(s)	299, 495
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 533
Bse1I	ACTGG	5 cut(s)	391, 407, 436, 501, 565
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	6 cut(s)	235, 324, 361, 543, 571, 701
BseLI	CCNNNNNNNGG	2 cut(s)	375, 533
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	5 cut(s)	391, 407, 436, 501, 565
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	4 cut(s)	71, 457, 610, 613
BseYI	CCCAGC	1 cut(s)	655
BshFI	GGCC	4 cut(s)	22, 368, 521, 670
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	3 cut(s)	299, 360, 495
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	375, 533
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	22, 368, 521, 670
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	7, 93, 144, 294
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	4 cut(s)	22, 368, 521, 670
BspCNI	CTCAG	1 cut(s)	808
BspHI	TCATGA	2 cut(s)	102, 333
BspLI	GGNNCC	4 cut(s)	95, 296, 499, 643
BspMAI	CTGCAG	1 cut(s)	447
BspPI	GGATC	5 cut(s)	2, 88, 101, 289, 302
BspTNI	GGTCTC	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	5 cut(s)	391, 407, 436, 501, 565
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	4 cut(s)	7, 93, 144, 294
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	4 cut(s)	163, 554, 690, 725
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	2 cut(s)	131, 451
BstAUI	TGTACA	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	456, 653
BstDEI	CTNAG	3 cut(s)	676, 701, 816
BstENI	CCTNNNNNAGG	1 cut(s)	373
BstF5I	GGATG	6 cut(s)	235, 324, 361, 543, 571, 701
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	4 cut(s)	10, 96, 147, 297
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	4 cut(s)	7, 93, 144, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 365, 451
BstNI	CCWGG	1 cut(s)	613
BstNSI	RCATGY	3 cut(s)	458, 550, 655
BstSCI	CCNGG	3 cut(s)	297, 493, 611
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	4 cut(s)	71, 457, 610, 613
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	3 cut(s)	93, 144, 294
BstXI	CCANNNNNNTGG	3 cut(s)	18, 148, 735
BstYI	RGATCY	3 cut(s)	93, 144, 294
BsuRI	GGCC	4 cut(s)	22, 368, 521, 670
BtsCI	GGATG	6 cut(s)	235, 324, 361, 543, 571, 701
BtsIMutI	CAGTG	2 cut(s)	48, 508
Cac8I	GCNNGC	2 cut(s)	456, 653
CaiI	CAGNNNCTG	2 cut(s)	442, 451
CciI	TCATGA	2 cut(s)	102, 333
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	725
Csp6I	GTAC	5 cut(s)	68, 117, 164, 550, 777
CviQI	GTAC	5 cut(s)	68, 117, 164, 550, 777
DdeI	CTNAG	3 cut(s)	676, 701, 816
DpnI	GATC	4 cut(s)	9, 95, 146, 296
DpnII	GATC	4 cut(s)	7, 93, 144, 294
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	611
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	60, 446, 624, 627
FokI	GGATG	6 cut(s)	242, 331, 368, 550, 578, 708
Fsp4HI	GCNGC	4 cut(s)	60, 446, 624, 627
FspAI	RTGCGCAY	1 cut(s)	313
FspBI	CTAG	1 cut(s)	593
FspI	TGCGCA	1 cut(s)	313
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	4 cut(s)	60, 446, 624, 627
GsaI	CCCAGC	1 cut(s)	659
HaeIII	GGCC	4 cut(s)	22, 368, 521, 670
HapII	CCGG	3 cut(s)	299, 360, 495
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	5 cut(s)	187, 233, 330, 575, 742
HpaII	CCGG	3 cut(s)	299, 360, 495
Hpy166II	GTNNAC	5 cut(s)	48, 119, 544, 707, 728
Hpy188I	TCNGA	2 cut(s)	84, 158
Hpy188III	TCNNGA	4 cut(s)	11, 103, 334, 373
Hpy8I	GTNNAC	5 cut(s)	48, 119, 544, 707, 728
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	33, 379
HpyCH4III	ACNGT	4 cut(s)	163, 554, 690, 725
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	6 cut(s)	281, 445, 454, 458, 506, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 365, 451
HpyF3I	CTNAG	3 cut(s)	676, 701, 816
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	153
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	7, 93, 144, 294
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	4 cut(s)	71, 457, 610, 613
LweI	GCATC	2 cut(s)	121, 346
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	4 cut(s)	9, 95, 146, 296
MboI	GATC	4 cut(s)	7, 93, 144, 294
MboII	GAAGA	2 cut(s)	269, 279
MflI	RGATCY	3 cut(s)	93, 144, 294
MhlI	GDGCHC	1 cut(s)	709
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	2 cut(s)	86, 748
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	6 cut(s)	101, 220, 253, 300, 369, 814
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	2 cut(s)	174, 798
MslI	CAYNNNNRTG	4 cut(s)	53, 338, 603, 733
Msp20I	TGGCCA	1 cut(s)	521
MspI	CCGG	3 cut(s)	299, 360, 495
MspR9I	CCNGG	3 cut(s)	299, 495, 613
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	3 cut(s)	131, 365, 451
NciI	CCSGG	2 cut(s)	299, 495
NdeII	GATC	4 cut(s)	7, 93, 144, 294
NlaIV	GGNNCC	4 cut(s)	95, 296, 499, 643
NmuCI	GTSAC	1 cut(s)	378
NsbI	TGCGCA	1 cut(s)	313
NspI	RCATGY	3 cut(s)	458, 550, 655
OliI	CACNNNNGTG	1 cut(s)	53
PaeI	GCATGC	2 cut(s)	458, 655
PagI	TCATGA	2 cut(s)	102, 333
PceI	AGGCCT	1 cut(s)	368
PciI	ACATGT	1 cut(s)	546
PfeI	GAWTC	4 cut(s)	233, 330, 575, 742
PfoI	TCCNGGA	2 cut(s)	297, 493
PkrI	GCNGC	4 cut(s)	61, 447, 625, 628
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	4 cut(s)	95, 296, 499, 643
PspPI	GGNCC	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	447
PstNI	CAGNNNCTG	2 cut(s)	442, 451
PsuI	RGATCY	3 cut(s)	93, 144, 294
RsaI	GTAC	5 cut(s)	69, 118, 165, 551, 778
RsaNI	GTAC	5 cut(s)	68, 117, 164, 550, 777
RseI	CAYNNNNRTG	4 cut(s)	53, 338, 603, 733
SaqAI	TTAA	2 cut(s)	174, 798
SatI	GCNGC	4 cut(s)	60, 446, 624, 627
Sau3AI	GATC	4 cut(s)	7, 93, 144, 294
Sau96I	GGNCC	1 cut(s)	725
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	3 cut(s)	299, 495, 613
SduI	GDGCHC	1 cut(s)	709
SetI	ASST	6 cut(s)	20, 77, 156, 311, 380, 774
SfaNI	GCATC	2 cut(s)	121, 346
SfcI	CTRYAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	4 cut(s)	53, 338, 603, 733
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
SphI	GCATGC	2 cut(s)	458, 655
Sse9I	AATT	2 cut(s)	86, 748
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	1 cut(s)	593
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	3 cut(s)	297, 493, 611
TaaI	ACNGT	4 cut(s)	163, 554, 690, 725
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	4 cut(s)	29, 348, 740, 806
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	86, 748
TatI	WGTACW	2 cut(s)	67, 116
TfiI	GAWTC	4 cut(s)	233, 330, 575, 742
Tru1I	TTAA	2 cut(s)	174, 798
Tru9I	TTAA	2 cut(s)	174, 798
TscAI	CASTG	2 cut(s)	55, 508
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	4 cut(s)	59, 445, 623, 626
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	4 cut(s)	246, 270, 322, 567
TspRI	CASTG	2 cut(s)	55, 508
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	1 cut(s)	725
XagI	CCTNNNNNAGG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	3 cut(s)	458, 550, 655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.