pycom13g08960

Armadillo repeat only

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
5986039 .. 5986632
594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
ATGCTGACCTTAGACAAGCCGCCTTTAAGACCAATTCTCCGGCTGCCAAGGCGGTTGTGGATCGAGCTCTTGAGACTGATCAAAGAGGTGGACAGCCCGATATTGCAAATTCCTGCTGTAAAATCGATTGGCTCGCTTGCCAGGGCATTCCCTGCTAGAGAGACGCGGGTCATTGGTCCGCTAGTGACTCAACTTGGCCACAAAGATCTTGACAGGGGAACTGAAGCAGCAATTGCACTGGGGAAGTTTGCTTGTCCGGATAATTTTCTCTGTATGGAGCATTCGAAGAAGATAATCGAGTCCAACGCTATCCCGCCTCTGATGAAACTGCTAAGAGGAAACGAACACTCGCAGCGGCACGGATTGATTCTTCTTTGCTACCTTGCATTGCACTCTGGGAATACCTACTCTTTGAAACCGACTAGGGTGTTGACAGTCCTTGAAGGGGCTGACCGCAGTGCACTCCCCCATCATCCCGAGTTGAGAGAGTTGGTGTCCAAGGCGATATATCACCTCAATCTGTACCACACCGGAGTTCATTCGCAAGGGATGACATTTGACATCTGTGCCGTGAATACAAATTCTCCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

9.44

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 7 cut(s) 20, 52, 166, 179, 314, 355, 454
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 2 cut(s) 108, 580
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 2 cut(s) 415, 443
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 2 cut(s) 69, 463
Alw26I GTCTC 2 cut(s) 67, 155
Alw44I GTGCAC 1 cut(s) 459
AlwI GGATC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 476
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 196
ApaLI GTGCAC 1 cut(s) 459
ApeKI GCWGC 3 cut(s) 43, 227, 352
ApoI RAATTY 2 cut(s) 108, 580
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 503
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 463
BalI TGGCCA 1 cut(s) 198
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 69, 463
BbvI GCAGC 3 cut(s) 30, 239, 364
BccI CCATC 1 cut(s) 477
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 142
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 67, 155
BfaI CTAG 3 cut(s) 156, 182, 423
BglII AGATCT 1 cut(s) 205
BisI GCNGC 5 cut(s) 20, 44, 228, 353, 356
BlsI GCNGC 5 cut(s) 21, 45, 229, 354, 357
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 47, 141, 498
BsaWI WCCGGW 2 cut(s) 256, 530
BsaXI ACNNNNNCTCC 3 cut(s) 21, 51, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 3 cut(s) 47, 141, 498
BseGI GGATG 2 cut(s) 472, 555
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 3 cut(s) 30, 239, 364
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 69, 463
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 3 cut(s) 40, 257, 531
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 2 cut(s) 67, 155
BsmBI CGTCTC 1 cut(s) 155
BsmI GAATGC 2 cut(s) 146, 280
BsnI GGCC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 476
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 69, 463
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 60, 78, 205
BspACI CCGC 7 cut(s) 20, 52, 166, 179, 314, 355, 454
BspANI GGCC 1 cut(s) 198
BspDI ATCGAT 1 cut(s) 125
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 1 cut(s) 166
BspPI GGATC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 3 cut(s) 47, 141, 498
BssMI GATC 3 cut(s) 60, 78, 205
BssT1I CCWWGG 2 cut(s) 47, 498
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 436
BstAPI GCANNNNNTGC 2 cut(s) 152, 233
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 134, 138
BstDEI CTNAG 2 cut(s) 10, 332
BstF5I GGATG 2 cut(s) 472, 555
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 3 cut(s) 63, 81, 208
BstMAI GTCTC 2 cut(s) 67, 155
BstMBI GATC 3 cut(s) 60, 78, 205
BstMWI GCNNNNNNNGC 3 cut(s) 49, 152, 233
BstNI CCWGG 1 cut(s) 142
BstPAI GACNNNNGTC 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 463
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 30, 239, 364
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 125
BsuRI GGCC 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 125
BtsCI GGATG 2 cut(s) 472, 555
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 236, 463
Cac8I GCNNGC 2 cut(s) 134, 138
Cfr13I GGNCC 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 125
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 523
CviJI RGCY 7 cut(s) 19, 43, 67, 96, 132, 198, 449
CviKI_1 RGCY 7 cut(s) 19, 43, 67, 96, 132, 198, 449
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 2 cut(s) 10, 332
DpnI GATC 3 cut(s) 62, 80, 207
DpnII GATC 3 cut(s) 60, 78, 205
EaeI YGGCCR 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 47, 498
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 2 cut(s) 47, 498
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 47, 498
Esp3I CGTCTC 1 cut(s) 155
FaiI YATR 2 cut(s) 275, 508
FauI CCCGC 2 cut(s) 159, 321
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 5 cut(s) 20, 44, 228, 353, 356
FokI GGATG 2 cut(s) 459, 562
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 5 cut(s) 20, 44, 228, 353, 356
FspBI CTAG 3 cut(s) 156, 182, 423
GluI GCNGC 5 cut(s) 20, 44, 228, 353, 356
HaeIII GGCC 1 cut(s) 198
HapII CCGG 3 cut(s) 40, 257, 531
HgaI GACGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 3 cut(s) 187, 299, 367
HpaII CCGG 3 cut(s) 40, 257, 531
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 3 cut(s) 91, 432, 461
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 4 cut(s) 70, 209, 257, 476
Hpy8I GTNNAC 3 cut(s) 91, 432, 461
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 5 cut(s) 106, 236, 386, 391, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 152, 233
HpyF3I CTNAG 2 cut(s) 10, 332
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 60, 78, 205
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 3 cut(s) 30, 239, 364
MaeI CTAG 3 cut(s) 156, 182, 423
MaeIII GTNAC 1 cut(s) 184
MalI GATC 3 cut(s) 62, 80, 207
MboI GATC 3 cut(s) 60, 78, 205
MboII GAAGA 3 cut(s) 298, 301, 362
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 69, 463
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 5 cut(s) 33, 108, 231, 262, 580
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 2 cut(s) 181, 308
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 4 cut(s) 79, 327, 329, 524
Mox20I TGGCCA 1 cut(s) 198
MroI TCCGGA 1 cut(s) 256
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 3 cut(s) 40, 257, 531
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 2 cut(s) 146, 280
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 3 cut(s) 49, 152, 233
NdeII GATC 3 cut(s) 60, 78, 205
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 1 cut(s) 284
PctI GAATGC 2 cut(s) 146, 280
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 5 cut(s) 21, 45, 229, 354, 357
PleI GAGTC 2 cut(s) 181, 307
PpsI GAGTC 2 cut(s) 181, 307
PshAI GACNNNNGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 5 cut(s) 20, 44, 228, 353, 356
Sau3AI GATC 3 cut(s) 60, 78, 205
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 181, 308
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 2 cut(s) 69, 463
SetI ASST 6 cut(s) 11, 69, 90, 384, 407, 516
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 5 cut(s) 33, 108, 231, 262, 580
SsiI CCGC 7 cut(s) 20, 52, 166, 179, 314, 355, 454
SspMI CTAG 3 cut(s) 156, 182, 423
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 2 cut(s) 47, 498
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 4 cut(s) 63, 125, 284, 297
TasI AATT 5 cut(s) 33, 108, 231, 262, 580
TauI GCSGC 2 cut(s) 22, 358
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 243, 463
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 43, 227, 352
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 338, 527
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 243, 463
VneI GTGCAC 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 2 cut(s) 108, 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XspI CTAG 3 cut(s) 156, 182, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.