Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6466116 .. 6466469

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGGAATTGTGGATATCAAGAGTTGGCAGTAACACTTGCACATGCGTGTCTTCTTCACATATATAATTCAGATCTGAAAGTTGAGTGTCCATTATCAAATATGGAGAATTCTCATCAAGTGTCGGACCACCTGGAGCCGTGGCGCCACCTCCACGGTAAGGTCGTCATGGTCACCGGCGCTTCCTCTGGCCTCGGCCGCGACGTTTGCTTAGACTTGGCTAAAGCCGGATGCAGAATCGTAGCCGCCGCTCGCCGCATCGACCGACTTCAGTCCATCTGCGATCGATCCTTTCGTGGAAATCAACCAGCTCTCCATCACGGCTCCGTCTTTTTCTTCTTCTGCTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0036094 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0048037 GO:0050661 GO:0050662 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

118

Amino Acids

13.06

Weight (kDa)

7.62

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	54 - 95	2.6e-08	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	1 cut(s)	201
AciI	CCGC	4 cut(s)	199, 246, 249, 256
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	132
AleI	CACNNNNGTG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	2 cut(s)	190, 196
ApeKI	GCWGC	2 cut(s)	345, 348
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	147, 182
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	332, 335
BccI	CCATC	2 cut(s)	284, 324
BceAI	ACGGC	2 cut(s)	124, 337
BciT130I	CCWGG	1 cut(s)	134
BfoI	RGCGCY	2 cut(s)	148, 183
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	6 cut(s)	199, 246, 249, 256, 346, 349
BlsI	GCNGC	6 cut(s)	200, 247, 250, 257, 347, 350
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	3 cut(s)	138, 146, 325
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	221, 267
BoxI	GACNNNNGTC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	140, 154, 193
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	3 cut(s)	140, 154, 193
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseX3I	CGGCCG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	332, 335
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	3 cut(s)	199, 265, 286
BshFI	GGCC	2 cut(s)	192, 198
BshNI	GGYRCC	1 cut(s)	144
BshVI	ATCGAT	1 cut(s)	286
BsiEI	CGRYCG	3 cut(s)	199, 265, 286
BsiSI	CCGG	2 cut(s)	177, 228
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	2 cut(s)	192, 198
Bsp143I	GATC	3 cut(s)	73, 283, 287
BspACI	CCGC	4 cut(s)	199, 246, 249, 256
BspANI	GGCC	2 cut(s)	192, 198
BspDI	ATCGAT	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	138, 146, 325
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	140, 154, 193
BssMI	GATC	3 cut(s)	73, 283, 287
BssNI	GRCGYC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	2 cut(s)	140, 154
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	236
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	2 cut(s)	148, 183
BstHHI	GCGC	2 cut(s)	147, 182
BstKTI	GATC	3 cut(s)	76, 286, 290
BstMBI	GATC	3 cut(s)	73, 283, 287
BstMCI	CGRYCG	3 cut(s)	199, 265, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 207
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	47
BstPAI	GACNNNNGTC	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	332, 335
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZI	CGGCCG	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	192, 198
BsuTUI	ATCGAT	1 cut(s)	286
BtgI	CCRYGG	2 cut(s)	140, 154
BtsCI	GGATG	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	2 cut(s)	147, 182
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	286
CviAII	CATG	2 cut(s)	44, 169
CviJI	RGCY	8 cut(s)	139, 192, 198, 221, 227, 245, 311, 324
CviKI_1	RGCY	8 cut(s)	139, 192, 198, 221, 227, 245, 311, 324
DdeI	CTNAG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	3 cut(s)	75, 285, 289
DpnII	GATC	3 cut(s)	73, 283, 287
EaeI	YGGCCR	1 cut(s)	196
EagI	CGGCCG	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	127
Eco52I	CGGCCG	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
FaeI	CATG	2 cut(s)	47, 172
FaiI	YATR	6 cut(s)	45, 62, 64, 66, 104, 170
FatI	CATG	2 cut(s)	43, 168
Fnu4HI	GCNGC	6 cut(s)	199, 246, 249, 256, 346, 349
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	6 cut(s)	199, 246, 249, 256, 346, 349
GlaI	GCGC	2 cut(s)	146, 181
GluI	GCNGC	6 cut(s)	199, 246, 249, 256, 346, 349
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	2 cut(s)	148, 183
HaeIII	GGCC	2 cut(s)	192, 198
HapII	CCGG	2 cut(s)	177, 228
HhaI	GCGC	2 cut(s)	147, 182
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	47, 172
Hin6I	GCGC	2 cut(s)	145, 180
HinP1I	GCGC	2 cut(s)	145, 180
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	2 cut(s)	177, 228
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	73, 78, 127
Hpy188III	TCNNGA	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	41, 234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 207
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	47, 172
HspAI	GCGC	2 cut(s)	145, 180
KasI	GGCGCC	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	73, 283, 287
LmnI	GCTCC	2 cut(s)	136, 329
LpnPI	CCDG	6 cut(s)	119, 146, 174, 190, 241, 321
Lsp1109I	GCAGC	2 cut(s)	332, 335
LweI	GCATC	2 cut(s)	221, 267
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	31, 172
MalI	GATC	3 cut(s)	75, 285, 289
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	3 cut(s)	73, 283, 287
MboII	GAAGA	4 cut(s)	44, 47, 328, 331
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	7, 67, 109
Mly113I	GGCGCC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	161, 196, 203
MslI	CAYNNNNRTG	1 cut(s)	46
MspI	CCGG	2 cut(s)	177, 228
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	198, 207
NarI	GGCGCC	1 cut(s)	145
NdeII	GATC	3 cut(s)	73, 283, 287
NlaIII	CATG	2 cut(s)	47, 172
NlaIV	GGNNCC	3 cut(s)	138, 146, 325
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	47
OliI	CACNNNNGTG	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 201, 292
PfeI	GAWTC	1 cut(s)	237
PkrI	GCNGC	6 cut(s)	200, 247, 250, 257, 347, 350
Ple19I	CGATCG	1 cut(s)	286
PluTI	GGCGCC	1 cut(s)	148
PshAI	GACNNNNGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	138, 146, 325
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	73
PvuI	CGATCG	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	46
SatI	GCNGC	6 cut(s)	199, 246, 249, 256, 346, 349
Sau3AI	GATC	3 cut(s)	73, 283, 287
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	5 cut(s)	135, 153, 165, 207, 313
SfaNI	GCATC	2 cut(s)	221, 267
SfoI	GGCGCC	1 cut(s)	146
SgrAI	CRCCGGYG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	46
Sse9I	AATT	3 cut(s)	7, 67, 109
SsiI	CCGC	4 cut(s)	199, 246, 249, 256
SspDI	GGCGCC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	261, 286
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	3 cut(s)	7, 67, 109
TauI	GCSGC	4 cut(s)	201, 248, 251, 258
TfiI	GAWTC	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	345, 348
Tsp45I	GTSAC	1 cut(s)	172
TspGWI	ACGGA	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.