pycom13g09890

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
6590445 .. 6590855
411 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGATATATGTCCATCAGGATTCATGGGGGTGGGGGATGTCGGTTGGCGTACTGTTAACCTTGGTTCTGTCATGGGCTTATGTGAGTACGATCACCTTAACAGCCAGCATTTTGTTTCACTTGGTCTGCAATTTGCAAGTTATCCACTTCGACGATTTCGGAAGGGTCTTGGAGAGGGAATCTGACGTGCTGGTGTTTATGGAGGAGCATATCCGTCTGCGCTACCATCTCTGTAAAATAAGCCACAGGTTCCGGATCTTCCTCCTACTGCAGTTCATAGTTGTCACCGCAAGCCAGTTTGTGACTCTATTCGAGACCACAGGATTCAGTGGAGAAATCGGTGTCATAAATGGAGGCGATTTTGCAGTACGTTCAACGCTTTTTGTGTGTATCCGATTGTCGGTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

137

Amino Acids

15.59

Weight (kDa)

6.03

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 10 - 130 2.6e-45 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 252
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 263
AfaI GTAC 3 cut(s) 51, 88, 369
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 1 cut(s) 375
AjiI CACGTC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 263
Aor13HI TCCGGA 1 cut(s) 252
AspLEI GCGC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 85, 277
BccI CCATC 2 cut(s) 21, 234
BciVI GTATCC 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 269
BfuI GTATCC 1 cut(s) 401
BmgBI CACGTC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 295
BseAI TCCGGA 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 400
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 252
Bsp143I GATC 2 cut(s) 90, 255
BspACI CCGC 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 273
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 308
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 90, 255
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 106, 292
BstF5I GGATG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 93, 258
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 90, 255
BstSFI CTRYAG 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BsuI GTATCC 1 cut(s) 401
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 106, 292
CfoI GCGC 1 cut(s) 222
Csp6I GTAC 3 cut(s) 50, 87, 368
CviAII CATG 2 cut(s) 24, 72
CviJI RGCY 4 cut(s) 77, 104, 243, 294
CviKI_1 RGCY 4 cut(s) 77, 104, 243, 294
CviQI GTAC 3 cut(s) 50, 87, 368
DpnI GATC 2 cut(s) 92, 257
DpnII GATC 2 cut(s) 90, 255
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 27, 75
FaiI YATR 9 cut(s) 7, 9, 25, 73, 81, 200, 210, 278, 347
FatI CATG 2 cut(s) 23, 71
FokI GGATG 1 cut(s) 49
GlaI GCGC 1 cut(s) 221
HapII CCGG 1 cut(s) 253
HhaI GCGC 1 cut(s) 222
Hin1II CATG 2 cut(s) 27, 75
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 4 cut(s) 20, 179, 304, 324
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 1 cut(s) 253
HphI GGTGA 2 cut(s) 85, 277
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 161, 184, 395
Hpy188III TCNNGA 3 cut(s) 17, 253, 313
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 2 cut(s) 186, 370
HpyCH4V TGCA 4 cut(s) 129, 136, 271, 365
HpySE526I ACGT 2 cut(s) 186, 370
Hsp92II CATG 2 cut(s) 27, 75
HspAI GCGC 1 cut(s) 220
Kpn2I TCCGGA 1 cut(s) 252
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 90, 255
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 2, 118, 176, 232, 266, 306, 308
MaeII ACGT 2 cut(s) 186, 370
MaeIII GTNAC 2 cut(s) 283, 301
MalI GATC 2 cut(s) 92, 257
MboI GATC 2 cut(s) 90, 255
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 255
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 4 cut(s) 168, 196, 272, 347
MroI TCCGGA 1 cut(s) 252
MseI TTAA 2 cut(s) 56, 98
MslI CAYNNNNRTG 1 cut(s) 28
MspI CCGG 1 cut(s) 253
NdeII GATC 2 cut(s) 90, 255
NlaIII CATG 2 cut(s) 27, 75
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 2 cut(s) 283, 301
PfeI GAWTC 3 cut(s) 20, 179, 324
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 273
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 3 cut(s) 51, 88, 369
RsaNI GTAC 3 cut(s) 50, 87, 368
RseI CAYNNNNRTG 1 cut(s) 28
SaqAI TTAA 2 cut(s) 56, 98
Sau3AI GATC 2 cut(s) 90, 255
SchI GAGTC 1 cut(s) 298
SetI ASST 5 cut(s) 62, 98, 189, 251, 373
SfcI CTRYAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 28
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 288
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 2 cut(s) 189, 373
TaqI TCGA 2 cut(s) 150, 312
TasI AATT 1 cut(s) 130
TfiI GAWTC 3 cut(s) 20, 179, 324
Tru1I TTAA 2 cut(s) 56, 98
Tru9I TTAA 2 cut(s) 56, 98
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 2 cut(s) 283, 301
Tsp45I GTSAC 2 cut(s) 283, 301
TspDTI ATGAA 2 cut(s) 12, 265
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.