Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6729725 .. 6730850

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATAGTCTTAGGATTGTTGAAGACATTGTTCCACAATCTATTGGTTGTCAGTCATCCAAAGAGCCCGTGCTGAGGAAGATAAGCGGAAAGAATCAATTGTGGCTTATTTATTACATCTTATGCGAAAATACTCCAAGCTGTTCAGAAGTGAAATCTCAGATGACAATGATTCACAAGGTTCTGCTCCTTGTTCTCCCACTATTCAGGGTTCTTTTAATTGCTAGTTGGTGTGAACAGAATAGAATTTATGTTCCTGATGGTCCCCCAGAGTCTCTTGACCTCAACTATTGGAGGCTTGCATTTGAGTCGGAGTCCACTGATTCAAAATCTATGGGTAGTGTTGGCTCTTGCAAGGTGAAGGGTGTCAAGGTGGTTCCTTTAGAGGAGAGCCATACTGTAAAGGGGGACGTTGGAAATGAAACAGAAGATGTGTCTCCATTAGAGGAAGAGTCTGAGCTTGATGTTTTCGAAAGTTATCAGGATCTTTTAACCACCTTGAATGAAGAGGAAGACTTCAGGAAGAGGTGCGAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTGCTGTCAACAATAACAGGTATAGTTGTTTAATAATATTAAAAGAATCGAATGCAATAACTAGTTTATTTGACAATATTTTGATTTGTTTTGTACTGAAAACTTCAGAGGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

227

Amino Acids

25.56

Weight (kDa)

4.62

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	502, 651
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	23, 327, 502, 559
AhlI	ACTAGT	1 cut(s)	623
AluBI	AGCT	2 cut(s)	141, 460
AluI	AGCT	2 cut(s)	141, 460
Alw26I	GTCTC	2 cut(s)	279, 441
AlwI	GGATC	1 cut(s)	492
ApoI	RAATTY	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	370
AsuII	TTCGAA	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	2 cut(s)	30, 519
BbvCI	CCTCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BcoDI	GTCTC	2 cut(s)	279, 441
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	2 cut(s)	225, 624
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	265, 378, 544
BpiI	GAAGAC	2 cut(s)	30, 519
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	3 cut(s)	65, 173, 447
BseRI	GAGGAG	1 cut(s)	401
BslFI	GGGAC	2 cut(s)	249, 422
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	279, 441
BsmFI	GGGAC	2 cut(s)	249, 422
BsmI	GAATGC	1 cut(s)	619
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	484
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	66, 172, 448
BspLI	GGNNCC	3 cut(s)	265, 378, 544
BspPI	GGATC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	4 cut(s)	444, 501, 518, 560
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	11, 74, 159, 456
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	2 cut(s)	279, 441
BstMBI	GATC	1 cut(s)	484
BstV2I	GAAGAC	2 cut(s)	30, 519
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	1 cut(s)	547
CviJI	RGCY	9 cut(s)	67, 106, 141, 298, 348, 393, 460, 545, 551
CviKI_1	RGCY	9 cut(s)	67, 106, 141, 298, 348, 393, 460, 545, 551
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	4 cut(s)	11, 74, 159, 456
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
Eam1104I	CTCTTC	4 cut(s)	444, 501, 518, 560
EarI	CTCTTC	4 cut(s)	444, 501, 518, 560
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	502, 651
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	1 cut(s)	550
FaiI	YATR	6 cut(s)	124, 252, 335, 396, 548, 585
FaqI	GGGAC	2 cut(s)	249, 422
FatI	CATG	1 cut(s)	546
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	225, 624
Hin1II	CATG	1 cut(s)	550
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	8 cut(s)	94, 172, 272, 308, 314, 323, 452, 608
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	3 cut(s)	236, 318, 571
Hpy188I	TCNGA	5 cut(s)	148, 162, 313, 457, 670
Hpy188III	TCNNGA	4 cut(s)	257, 278, 482, 520
Hpy8I	GTNNAC	3 cut(s)	236, 318, 571
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	3 cut(s)	302, 354, 617
HpyF3I	CTNAG	4 cut(s)	11, 74, 159, 456
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	550
Kzo9I	GATC	1 cut(s)	484
LmnI	GCTCC	2 cut(s)	192, 542
LpnPI	CCDG	6 cut(s)	193, 270, 282, 467, 505, 565
MaeI	CTAG	2 cut(s)	225, 624
MaeII	ACGT	1 cut(s)	411
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	8 cut(s)	35, 91, 440, 461, 518, 524, 535, 547
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	98, 219, 246
MlyI	GAGTC	4 cut(s)	281, 317, 323, 461
MmeI	TCCRAC	2 cut(s)	291, 394
MnlI	CCTC	9 cut(s)	69, 288, 293, 379, 439, 502, 519, 526, 664
MseI	TTAA	5 cut(s)	218, 491, 593, 602, 679
MunI	CAATTG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	1 cut(s)	550
NlaIV	GGNNCC	3 cut(s)	265, 378, 544
NspV	TTCGAA	1 cut(s)	471
PctI	GAATGC	1 cut(s)	619
PfeI	GAWTC	4 cut(s)	94, 172, 323, 608
PleI	GAGTC	4 cut(s)	280, 316, 322, 460
PpsI	GAGTC	4 cut(s)	280, 316, 322, 460
PspN4I	GGNNCC	3 cut(s)	265, 378, 544
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
SaqAI	TTAA	5 cut(s)	218, 491, 593, 602, 679
Sau3AI	GATC	1 cut(s)	484
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	4 cut(s)	281, 317, 323, 461
SduI	GDGCHC	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	471
SinI	GGWCC	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	623
Sse9I	AATT	3 cut(s)	98, 219, 246
SsiI	CCGC	1 cut(s)	87
SspI	AATATT	2 cut(s)	600, 640
SspMI	CTAG	2 cut(s)	225, 624
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	2 cut(s)	471, 611
TasI	AATT	3 cut(s)	98, 219, 246
TatI	WGTACW	1 cut(s)	655
TfiI	GAWTC	4 cut(s)	94, 172, 323, 608
Tru1I	TTAA	5 cut(s)	218, 491, 593, 602, 679
Tru9I	TTAA	5 cut(s)	218, 491, 593, 602, 679
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	435, 519
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	2 cut(s)	225, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.