Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6851366 .. 6851587

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGTGACCGTCGAGGAAGTTCGTAAGGCTCAACGGGCTGAGGGTCCGGCCACGGTATTCGCCATTGGGACAGCAACTCCTCTCAATTGTGTGGATCAAGCCACATACCCTGATTATTACTTTCGTATCACCAAGAGTGAGCACAAAGCCGAACTCAAAGAAAAATTCCAGCGCATGTGTATGTACCATATATTTTTTTTGTTCTTATTTCTCTTCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

74

Amino Acids

8.62

Weight (kDa)

6.72

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	5 - 61	2.5e-22	Chalcone and stilbene synthases, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	16, 121
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	102
BspT104I	TTCGAA	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	10, 55
Bst6I	CTCTTC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	51
BstEII	GGTNACC	1 cut(s)	4
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	51
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	29, 38, 50, 101, 149
CviKI_1	RGCY	5 cut(s)	29, 38, 50, 101, 149
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
FaeI	CATG	1 cut(s)	178
FaiI	YATR	5 cut(s)	106, 176, 182, 189, 191
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	16, 121
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	10, 55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	3 cut(s)	60, 123, 182
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	205
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	85, 164
MnlI	CCTC	3 cut(s)	7, 34, 90
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	216
SgeI	CNNG	9 cut(s)	25, 47, 59, 64, 110, 122, 145, 181, 187
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	85, 164
TaaI	ACNGT	2 cut(s)	10, 55
TaqI	TCGA	2 cut(s)	12, 216
TasI	AATT	2 cut(s)	85, 164
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.