Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6872418 .. 6874099

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAGCAAACCCGATTTTGTTCCAGAGATCTCTTCGACAAGCCCATTTTGCTCCAGAGCTCTTCAACGACAAAGTCGATTCAGCGCCTCACCGTCGCACACCTCGCCTTCCCCTCGCCGTCGCACACCTTGCCTTACCTCGCCGCCGCACTCCTTACCAGAACTCGAATCAATGGGAGAGAGGCGTGGGATGGCAGGGAGGGGAAGGGAGAGGAAGGAGTGAGGCTGCCAAAAAGGGGGTTAGGGGAGTTGGTGAGTATGGGCTTGCACAGAGGGAAGAACACAGAAAGAGAGAGAGAGAGAGGGAGAGGGAGGGAATGATTGCACAGAGACAAGGAGAGAGACAGAGAGAGATCGTCTGCAGAGATTTTTTTCTCTTTGCAGGACAAAAAACTACCAGGGAAGGAGGAGACTGCCAGGAATGTAAAACCCAGACAGGAGAAGACAAGCAATGGCGGAGGAACCAAGGCTGTAGATCTTTGATAAAAGTAATCACTGACAATATCATGCTATTTCCATTCCTTTATTTTTTGATTAGGGATTTGCATATTGCTAAAAGAGAGGAAGACATTGGCTATTGTGCTGGATATGTAGCTGAGTTGATGATTGTCGCTACTTACCTTTTGTATTCTTCACCGTTTTGTTCCTTAACAAGTGTCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

223

Amino Acids

25.74

Weight (kDa)

9.45

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	145, 148, 457
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	398, 417
AluBI	AGCT	2 cut(s)	61, 596
AluI	AGCT	2 cut(s)	61, 596
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	325, 337, 405
ApeKI	GCWGC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	83, 266, 627
BanII	GRGCYC	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	450, 573
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	400, 419
BcoDI	GTCTC	3 cut(s)	325, 337, 405
BfmI	CTRYAG	2 cut(s)	361, 472
BfoI	RGCGCY	1 cut(s)	89
BglII	AGATCT	2 cut(s)	29, 476
BisI	GCNGC	3 cut(s)	145, 148, 228
BlsI	GCNGC	3 cut(s)	146, 149, 229
Bme1390I	CCNGG	2 cut(s)	400, 419
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	2 cut(s)	400, 419
BpiI	GAAGAC	2 cut(s)	450, 573
BpmI	CTGGAG	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	399, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	458
BseBI	CCWGG	2 cut(s)	400, 419
BseDI	CCNNGG	2 cut(s)	399, 466
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	3 cut(s)	325, 337, 405
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	29, 354, 476
BspACI	CCGC	3 cut(s)	145, 148, 457
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	365
BspQI	GCTCTTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	399, 466
BssMI	GATC	3 cut(s)	29, 354, 476
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	400, 419
Bst4CI	ACNGT	2 cut(s)	95, 639
Bst6I	CTCTTC	2 cut(s)	39, 68
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	32, 357, 479
BstMAI	GTCTC	3 cut(s)	325, 337, 405
BstMBI	GATC	3 cut(s)	29, 354, 476
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 105, 131
BstNI	CCWGG	2 cut(s)	400, 419
BstSCI	CCNGG	2 cut(s)	398, 417
BstSFI	CTRYAG	2 cut(s)	361, 472
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	450, 573
BstX2I	RGATCY	2 cut(s)	29, 476
BstYI	RGATCY	2 cut(s)	29, 476
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	88
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	7 cut(s)	44, 61, 227, 265, 471, 576, 596
CviKI_1	RGCY	7 cut(s)	44, 61, 227, 265, 471, 576, 596
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	3 cut(s)	31, 356, 478
DpnII	GATC	3 cut(s)	29, 354, 476
Eam1104I	CTCTTC	2 cut(s)	39, 68
EarI	CTCTTC	2 cut(s)	39, 68
EciI	GGCGGA	1 cut(s)	472
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	398, 417
EcoT14I	CCWWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	1 cut(s)	511
FaiI	YATR	4 cut(s)	261, 509, 549, 591
FatI	CATG	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	145, 148, 228
FokI	GGATG	1 cut(s)	204
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	3 cut(s)	145, 148, 228
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	3 cut(s)	145, 148, 228
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	89
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	511
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	80, 169
HphI	GGTGA	3 cut(s)	83, 266, 627
Hpy188III	TCNNGA	2 cut(s)	25, 56
Hpy99I	CGWCG	2 cut(s)	99, 125
HpyAV	CCTTC	4 cut(s)	119, 200, 210, 398
HpyCH4III	ACNGT	2 cut(s)	95, 639
HpyCH4V	TGCA	5 cut(s)	269, 326, 363, 383, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 105, 131
HpyF3I	CTNAG	1 cut(s)	597
Hsp92II	CATG	1 cut(s)	511
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	29, 354, 476
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	214
MalI	GATC	3 cut(s)	31, 356, 478
MboI	GATC	3 cut(s)	29, 354, 476
MboII	GAAGA	6 cut(s)	26, 55, 290, 455, 578, 624
MflI	RGATCY	2 cut(s)	29, 476
MhlI	GDGCHC	1 cut(s)	63
MseI	TTAA	1 cut(s)	650
MspR9I	CCNGG	2 cut(s)	400, 419
MvaI	CCWGG	2 cut(s)	400, 419
MwoI	GCNNNNNNNGC	3 cut(s)	50, 105, 131
NdeII	GATC	3 cut(s)	29, 354, 476
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	80, 169
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	146, 149, 229
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	398, 417
PspGI	CCWGG	2 cut(s)	398, 417
PspN4I	GGNNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	29, 476
PsyI	GACNNNGTC	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	3 cut(s)	145, 148, 228
Sau3AI	GATC	3 cut(s)	29, 354, 476
ScrFI	CCNGG	2 cut(s)	400, 419
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	6 cut(s)	63, 106, 132, 142, 598, 624
SfcI	CTRYAG	2 cut(s)	361, 472
SsiI	CCGC	3 cut(s)	145, 148, 457
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	398, 417
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	95, 639
TaqI	TCGA	3 cut(s)	37, 78, 167
TauI	GCSGC	2 cut(s)	147, 150
TfiI	GAWTC	2 cut(s)	80, 169
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	1 cut(s)	227
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.