Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7257226 .. 7257753

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGCAAGGGTGGCTCCCTGAGCGAGAGTGTGATAAAAAAGATCTTCCTCTCCTACACCTATGTCGCCATATGGATCTTCCTTTCCTTTAGTGTCATTATCTACAACAAATACATCCTCGACAAGAAGATGTACAATTGGCCCTTCCTCATCTCCCTCACCATCGATCCACATGTCCTTCTGCGCCTCCCTCGCCTTCCTCCTCGTCGACGTCTTCCACCTCATCAAGTCGTCACCATGTCCTGCGACCTTTACCTCTCCTCCGTCGTCCCCATTGACGCCCTTTACTCCCTCTCCCTCTGGCTCTCCAACTCCGCCTTTCGAATGCTCAAGGCCTTTATGCCCGTCGCTGTCTACTCCATCGGCGTCTCCTTAAAAAAAGAGTCATTCAAAACCGACACCATGGTCAACATGATCTTCATCTCCATCAGTGTTGCCATCGCCTCCTACGGTGAGGCCCGATTCGACACCTGGGGCGTCATCCTCCAGCTGATGCCGTCACATTCGAGGCCACCCGCCTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015931 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0097708 GO:0098791 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

176

Amino Acids

19.89

Weight (kDa)

9.78

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AatII	GACGTC	1 cut(s)	214
AccI	GTMKAC	2 cut(s)	208, 354
AciI	CCGC	2 cut(s)	315, 516
AclWI	GGATC	2 cut(s)	83, 161
AcyI	GRCGYC	4 cut(s)	211, 279, 366, 477
AfaI	GTAC	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	83, 161
AoxI	GGCC	4 cut(s)	140, 333, 456, 509
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	141, 457
AsuHPI	GGTGA	3 cut(s)	151, 226, 464
AsuII	TTCGAA	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	206
BccI	CCATC	4 cut(s)	170, 368, 434, 446
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	141, 457
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	419
BsaHI	GRCGYC	4 cut(s)	211, 279, 366, 477
BsaJI	CCNNGG	2 cut(s)	402, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 278, 308
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	472
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	402, 471
BseGI	GGATG	2 cut(s)	114, 480
BseJI	GATNNNNATC	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	192, 250
BshFI	GGCC	4 cut(s)	142, 335, 458, 511
BshVI	ATCGAT	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	4 cut(s)	142, 335, 458, 511
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	42, 75, 166, 414
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	2 cut(s)	315, 516
BspANI	GGCC	4 cut(s)	142, 335, 458, 511
BspCNI	CTCAG	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	83, 161
BspT104I	TTCGAA	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	402, 471
BssMI	GATC	4 cut(s)	42, 75, 166, 414
BssNI	GRCGYC	4 cut(s)	211, 279, 366, 477
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	452
BstACI	GRCGYC	4 cut(s)	211, 279, 366, 477
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	114, 480
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	4 cut(s)	45, 78, 169, 417
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	42, 75, 166, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 21, 192
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	42, 75
BstYI	RGATCY	2 cut(s)	42, 75
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	142, 335, 458, 511
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	114, 480
BtsIMutI	CAGTG	1 cut(s)	436
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	141, 457
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	3 cut(s)	287, 355, 466
Csp6I	GTAC	1 cut(s)	133
CspCI	CAANNNNNGTGG	1 cut(s)	501
CviAII	CATG	4 cut(s)	173, 238, 403, 412
CviJI	RGCY	7 cut(s)	15, 142, 304, 335, 458, 490, 511
CviKI_1	RGCY	7 cut(s)	15, 142, 304, 335, 458, 490, 511
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	4 cut(s)	44, 77, 168, 416
DpnII	GATC	4 cut(s)	42, 75, 166, 414
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	402
Eco147I	AGGCCT	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	4 cut(s)	176, 241, 406, 415
FaiI	YATR	8 cut(s)	63, 71, 73, 174, 239, 341, 404, 413
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	172, 237, 402, 411
FauI	CCCGC	1 cut(s)	523
FauNDI	CATATG	1 cut(s)	71
FblI	GTMKAC	2 cut(s)	208, 354
FokI	GGATG	2 cut(s)	101, 467
GlaI	GCGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	4 cut(s)	142, 335, 458, 511
HgaI	GACGC	3 cut(s)	287, 355, 466
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	4 cut(s)	211, 279, 366, 477
Hin1II	CATG	4 cut(s)	176, 241, 406, 415
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	2 cut(s)	209, 409
HindII	GTYRAC	2 cut(s)	209, 409
HinfI	GANTC	2 cut(s)	383, 462
HphI	GGTGA	3 cut(s)	151, 226, 464
Hpy166II	GTNNAC	3 cut(s)	209, 355, 409
Hpy188III	TCNNGA	1 cut(s)	525
Hpy8I	GTNNAC	3 cut(s)	209, 355, 409
Hpy99I	CGWCG	4 cut(s)	210, 213, 269, 350
HpyAV	CCTTC	3 cut(s)	154, 188, 206
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 21, 192
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	211
Hsp92I	GRCGYC	4 cut(s)	211, 279, 366, 477
Hsp92II	CATG	4 cut(s)	176, 241, 406, 415
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	42, 75, 166, 414
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	6 cut(s)	32, 256, 286, 457, 484, 500
LweI	GCATC	1 cut(s)	483
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	232, 498
MalI	GATC	4 cut(s)	44, 77, 168, 416
MboI	GATC	4 cut(s)	42, 75, 166, 414
MboII	GAAGA	5 cut(s)	37, 70, 139, 206, 409
MfeI	CAATTG	1 cut(s)	136
MflI	RGATCY	2 cut(s)	42, 75
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	333
MseI	TTAA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	136
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	3 cut(s)	12, 21, 192
NcoI	CCATGG	1 cut(s)	402
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	4 cut(s)	42, 75, 166, 414
NlaIII	CATG	4 cut(s)	176, 241, 406, 415
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	232, 498
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	335
PciI	ACATGT	1 cut(s)	172
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	462
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PscI	ACATGT	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	141, 457
PsuI	RGATCY	2 cut(s)	42, 75
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	374
Sau3AI	GATC	4 cut(s)	42, 75, 166, 414
Sau96I	GGNCC	2 cut(s)	141, 457
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	472
SetI	ASST	7 cut(s)	62, 214, 223, 252, 258, 473, 492
SfaNI	GCATC	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	322
SgrDI	CGTCGACG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	2 cut(s)	315, 516
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	6 cut(s)	120, 165, 208, 322, 465, 506
TasI	AATT	1 cut(s)	136
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	232, 498
Tsp45I	GTSAC	2 cut(s)	232, 498
TspDTI	ATGAA	1 cut(s)	409
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	436
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	208, 354
ZraI	GACGTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.