Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8538259 .. 8538654

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTGACGCAGGTCTCACCGGCCGCAAGATCGATCATCGACACCTATGGAGGGTGGGGTGCTCACGGAGGTGGTGCCTTCTCAGGCAAGGACCCAACCAAGGTGGACAGGAGTGGTGCCTACATTGTGAGGCAGGCTGCAAAGTCCATTGTGGCCAATGGACTTGCAAGGAGGTGCATTGTGCAGGTTTCCTATGCCATCGGTGTGCCCGAGCCTTTGTCAGTGTTTGTTGATTCTTATGGCACCGGAAAGATCCCCGACAAGGAGATCCTCAAGATTGTGAAGGAGACATTCGATTTCAGGCCAGGCATCGATCTCCATCAACCTGGACCTCAAGAGGGGTGGCAATGGAAGGTTTTTGAAGACCGCCGCCTACGGACACTTCGGCAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004478 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019438 GO:0019748 GO:0019752 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

132

Amino Acids

14.34

Weight (kDa)

9.56

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-AdoMet_synt_C	PF02773	10 - 103	5.4e-42	S-adenosylmethionine synthetase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccB1I	GGYRCC	3 cut(s)	74, 116, 242
AciI	CCGC	3 cut(s)	24, 367, 370
AclWI	GGATC	2 cut(s)	247, 262
AcoI	YGGCCR	2 cut(s)	21, 153
AfiI	CCNNNNNNNGG	4 cut(s)	51, 100, 262, 338
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	304, 325
AleI	CACNNNNGTG	1 cut(s)	69
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	19, 281
AlwI	GGATC	2 cut(s)	247, 262
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	21, 153, 302
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	91, 329
AsuHPI	GGTGA	2 cut(s)	9, 16
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	91, 329
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	3 cut(s)	74, 116, 242
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	206, 327
BciT130I	CCWGG	2 cut(s)	306, 327
BcoDI	GTCTC	2 cut(s)	19, 281
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	24, 138, 370
BlsI	GCNGC	3 cut(s)	25, 139, 371
Bme1390I	CCNGG	2 cut(s)	306, 327
Bme18I	GGWCC	2 cut(s)	91, 329
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	91, 329
BmiI	GGNNCC	4 cut(s)	76, 93, 118, 244
BmrFI	CCNGG	2 cut(s)	306, 327
BmsI	GCATC	1 cut(s)	318
BoxI	GACNNNNGTC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	257, 318
Bsa29I	ATCGAT	2 cut(s)	32, 312
BsaBI	GATNNNNATC	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 100, 262, 338
Bse118I	RCCGGY	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	306, 327
BseCI	ATCGAT	2 cut(s)	32, 312
BseDI	CCNNGG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	4 cut(s)	51, 100, 262, 338
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	23, 155, 304
BshNI	GGYRCC	3 cut(s)	74, 116, 242
BshVI	ATCGAT	2 cut(s)	32, 312
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	20, 246
BslI	CCNNNNNNNGG	4 cut(s)	51, 100, 262, 338
BsmAI	GTCTC	2 cut(s)	19, 281
BsnI	GGCC	3 cut(s)	23, 155, 304
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	64, 210
Bsp143I	GATC	5 cut(s)	29, 33, 252, 267, 313
BspACI	CCGC	3 cut(s)	24, 367, 370
BspANI	GGCC	3 cut(s)	23, 155, 304
BspCNI	CTCAG	1 cut(s)	95
BspDI	ATCGAT	2 cut(s)	32, 312
BspLI	GGNNCC	4 cut(s)	76, 93, 118, 244
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	247, 262
BspT107I	GGYRCC	3 cut(s)	74, 116, 242
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	5 cut(s)	29, 33, 252, 267, 313
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	306, 327
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	82
BstKTI	GATC	5 cut(s)	32, 36, 255, 270, 316
BstMAI	GTCTC	2 cut(s)	19, 281
BstMBI	GATC	5 cut(s)	29, 33, 252, 267, 313
BstMCI	CGRYCG	1 cut(s)	24
BstNI	CCWGG	2 cut(s)	306, 327
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	304, 325
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	252, 267
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	2 cut(s)	252, 267
BstZI	CGGCCG	1 cut(s)	21
Bsu15I	ATCGAT	2 cut(s)	32, 312
BsuRI	GGCC	3 cut(s)	23, 155, 304
BsuTUI	ATCGAT	2 cut(s)	32, 312
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	91, 329
ClaI	ATCGAT	2 cut(s)	32, 312
CseI	GACGC	1 cut(s)	16
CspCI	CAANNNNNGTGG	4 cut(s)	84, 119, 323, 358
CviJI	RGCY	5 cut(s)	23, 137, 155, 214, 304
CviKI_1	RGCY	5 cut(s)	23, 137, 155, 214, 304
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	5 cut(s)	31, 35, 254, 269, 315
DpnII	GATC	5 cut(s)	29, 33, 252, 267, 313
EaeI	YGGCCR	2 cut(s)	21, 153
EagI	CGGCCG	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	91, 329
Eco52I	CGGCCG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	304, 325
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaiI	YATR	3 cut(s)	48, 195, 240
Fnu4HI	GCNGC	3 cut(s)	24, 138, 370
Fsp4HI	GCNGC	3 cut(s)	24, 138, 370
GluI	GCNGC	3 cut(s)	24, 138, 370
HaeIII	GGCC	3 cut(s)	23, 155, 304
HapII	CCGG	2 cut(s)	20, 246
HgaI	GACGC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	2 cut(s)	20, 246
HphI	GGTGA	2 cut(s)	9, 16
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	274, 335
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	88, 277, 346
HpyCH4V	TGCA	4 cut(s)	140, 167, 177, 184
HpyF3I	CTNAG	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	29, 33, 252, 267, 313
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	31, 35, 254, 269, 315
MboI	GATC	5 cut(s)	29, 33, 252, 267, 313
MboII	GAAGA	1 cut(s)	374
MflI	RGATCY	2 cut(s)	252, 267
MhlI	GDGCHC	2 cut(s)	64, 210
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MnlI	CCTC	7 cut(s)	44, 62, 123, 165, 281, 331, 342
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	69, 203
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	2 cut(s)	20, 246
MspR9I	CCNGG	2 cut(s)	306, 327
MvaI	CCWGG	2 cut(s)	306, 327
NdeII	GATC	5 cut(s)	29, 33, 252, 267, 313
NlaIV	GGNNCC	4 cut(s)	76, 93, 118, 244
NmuCI	GTSAC	1 cut(s)	4
OliI	CACNNNNGTG	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	25, 139, 371
PpuMI	RGGWCCY	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	304, 325
PspGI	CCWGG	2 cut(s)	304, 325
PspN4I	GGNNCC	4 cut(s)	76, 93, 118, 244
PspPI	GGNCC	2 cut(s)	91, 329
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	252, 267
RseI	CAYNNNNRTG	2 cut(s)	69, 203
SatI	GCNGC	3 cut(s)	24, 138, 370
Sau3AI	GATC	5 cut(s)	29, 33, 252, 267, 313
Sau96I	GGNCC	2 cut(s)	91, 329
ScrFI	CCNGG	2 cut(s)	306, 327
SduI	GDGCHC	2 cut(s)	64, 210
SetI	ASST	9 cut(s)	15, 47, 73, 105, 176, 189, 328, 334, 357
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	2 cut(s)	91, 329
SmiMI	CAYNNNNRTG	2 cut(s)	69, 203
SmlI	CTYRAG	2 cut(s)	272, 333
SmoI	CTYRAG	2 cut(s)	272, 333
SsiI	CCGC	3 cut(s)	24, 367, 370
StyD4I	CCNGG	2 cut(s)	304, 325
StyI	CCWWGG	1 cut(s)	99
TaqI	TCGA	4 cut(s)	32, 39, 294, 312
TauI	GCSGC	2 cut(s)	26, 372
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	4
TspGWI	ACGGA	2 cut(s)	81, 391
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	91, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.