pycom13g12620

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
8793435 .. 8793683
249 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGAATGGGCTGTGGGTCAATGAACCTCATTCGGATATCATACAGAAATTCCTTCGGGTTTTAGCAATCTGTCATACGGCCATTCCAGTTGTGGATAAAGCATCAGGAGAAATAACCTATGAATCTGAGTCACCGGGTTTTAGCAATCTGTCATACAGCCTTTCCTTCGGGTTTTTCCTTGCTTTTTTCTTTTTCTGTGATGTAATTTCTGAAACCTTGATTTTTTTAAGGCTTCTCTTGCAAGCATAA

Protein Analysis

83

Amino Acids

9.27

Weight (kDa)

4.78

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 47
AoxI GGCC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 123
BceAI ACGGC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 86
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 134
BsnI GGCC 1 cut(s) 80
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 243
CviJI RGCY 4 cut(s) 10, 80, 159, 232
CviKI_1 RGCY 4 cut(s) 10, 80, 159, 232
DdeI CTNAG 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 78
Eco32I GATATC 1 cut(s) 37
EcoRV GATATC 1 cut(s) 37
FaiI YATR 5 cut(s) 41, 75, 120, 154, 247
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 134
HinfI GANTC 2 cut(s) 122, 128
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 34, 127, 211
Hpy188III TCNNGA 1 cut(s) 105
HpyAV CCTTC 2 cut(s) 62, 175
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 126
LpnPI CCDG 3 cut(s) 90, 99, 147
LweI GCATC 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 129
MluCI AATT 2 cut(s) 47, 204
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 1 cut(s) 36
MseI TTAA 1 cut(s) 227
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 122
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 227
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 135
SetI ASST 3 cut(s) 28, 119, 218
SfaNI GCATC 1 cut(s) 110
SgeI CNNG 8 cut(s) 68, 98, 117, 146, 147, 181, 191, 229
Sse9I AATT 2 cut(s) 47, 204
StyD4I CCNGG 1 cut(s) 133
TasI AATT 2 cut(s) 47, 204
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseFI GTSAC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 17, 36, 135
XapI RAATTY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.