Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9000812 .. 9002085

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCTGGAGGCTGCCACTTCTGCTCTACCTAGCGGTGTTTTCCAACAGGCCATGCATTGGATGGCCATTGCACACACAAAGGTCTATGAATATATTCATGAACAAAGGTTTCTCTTTATGCGGCCATATGGTCCCTTCGATGTTGCTGCTGTTTCACTGGCTAACTCCTTGACTCTCCACTCATATGTGGATAGTGTTTCTGACAAGCTGGATTTCTTAGGACTCTCCACTCATATGTGGATAGTGTTTCTGACAATGGTGTGTGGTGCTGGACAGAAGCTAGTAGAGACTGATGAGTTTAGTGAATCTGGACGTGGGGTATATCCAGATGGCTTGTACCGCGTGCTTCTTCAGTTTCATGAAAAACATAAACATCTTAATGTACCCTTCATGATTACTGAAAATGGGGTACATTTACTTGCTGTTTATGCAGCCAAGATCAAGGGTGTCCCTGCGCTTGGCTACCTGTTTTGGATTATTTCTGATAACTGGGAGTGGGCGGCTGGGAATGGTCCCAAGTTTGGACTTGTAGCAGTTGACCATATGCCAATAATCTTTCCCGGATTCCACGTCCTTCTTACCATCTATTTACTAAGGTTAATGTTTTTTTCTTGTCCTTGCTCATGTTTTCTTTCCATGTTCTGCTTCTTTCTCCCTAATACAGCCGCAGTTGTACTATTTGTTAAAAGTTTTGGCGACTGTTTTCACTTCAGGTGGCGACAACAGGTAAAATTACACGAGATGATCGGGCACAGGCTTGGAGTGACATCAATCAAGCTGCTAAAGCCCATTTATCGGGAAGTTAATAGGCACGGTTTGATGTATGCAGGTAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0008378 GO:0008422 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009628 GO:0009707 GO:0009941 GO:0015926 GO:0016020 GO:0016021 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050826 GO:0050896 GO:0071704 GO:0080079 GO:0098588 GO:0098805 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00561 map00561

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

280

Amino Acids

31.82

Weight (kDa)

8.68

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	818
AccB7I	CCANNNNNTGG	1 cut(s)	57
AccII	CGCG	1 cut(s)	342
AciI	CCGC	5 cut(s)	33, 121, 340, 500, 666
AcoI	YGGCCR	2 cut(s)	63, 122
AcuI	CTGAAG	2 cut(s)	335, 694
AfaI	GTAC	4 cut(s)	338, 384, 411, 675
AfiI	CCNNNNNNNGG	4 cut(s)	57, 458, 521, 795
AjiI	CACGTC	2 cut(s)	314, 571
AluBI	AGCT	3 cut(s)	208, 280, 778
AluI	AGCT	3 cut(s)	208, 280, 778
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	3 cut(s)	48, 63, 122
ApeKI	GCWGC	4 cut(s)	11, 146, 431, 778
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	131, 512
AsuC2I	CCSGG	1 cut(s)	561
AvaII	GGWCC	2 cut(s)	131, 512
BaeGI	GKGCMC	1 cut(s)	753
BalI	TGGCCA	1 cut(s)	65
BauI	CACGAG	1 cut(s)	737
BbvI	GCAGC	3 cut(s)	133, 443, 765
BccI	CCATC	3 cut(s)	55, 323, 590
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	30, 281
BfuAI	ACCTGC	1 cut(s)	818
BisI	GCNGC	7 cut(s)	12, 122, 147, 432, 501, 666, 779
BlsI	GCNGC	7 cut(s)	13, 123, 148, 433, 502, 667, 780
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	2 cut(s)	131, 512
BmgBI	CACGTC	2 cut(s)	314, 571
BmgT120I	GGNCC	2 cut(s)	131, 512
BmiI	GGNNCC	2 cut(s)	133, 514
BmrFI	CCNGG	1 cut(s)	561
BmrI	ACTGGG	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	499
BpmI	CTGGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 458, 521, 795
Bse1I	ACTGG	2 cut(s)	162, 494
Bse3DI	GCAATG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	57, 458, 521, 795
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	162, 494
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	3 cut(s)	133, 443, 765
BseYI	CCCAGC	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	3 cut(s)	50, 65, 124
BsiSI	CCGG	1 cut(s)	561
BslFI	GGGAC	3 cut(s)	117, 434, 498
BslI	CCNNNNNNNGG	4 cut(s)	57, 458, 521, 795
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	3 cut(s)	117, 434, 498
BsnI	GGCC	3 cut(s)	50, 65, 124
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	438, 744
BspACI	CCGC	5 cut(s)	33, 121, 340, 500, 666
BspANI	GGCC	3 cut(s)	50, 65, 124
BspFNI	CGCG	1 cut(s)	342
BspHI	TCATGA	3 cut(s)	97, 358, 390
BspLI	GGNNCC	2 cut(s)	133, 514
BspMI	ACCTGC	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	162, 494
BssMI	GATC	2 cut(s)	438, 744
BssSI	CACGAG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	737
Bst4CI	ACNGT	2 cut(s)	701, 815
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	217, 593
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	441, 747
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	438, 744
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 339, 428, 784
BstSCI	CCNGG	1 cut(s)	559
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	133, 443, 765
BsuRI	GGCC	3 cut(s)	50, 65, 124
BtrI	CACGTC	2 cut(s)	314, 571
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	1 cut(s)	344
CciI	TCATGA	3 cut(s)	97, 358, 390
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	131, 512
Csp6I	GTAC	4 cut(s)	337, 383, 410, 674
CviAII	CATG	6 cut(s)	52, 98, 359, 391, 624, 637
CviQI	GTAC	4 cut(s)	337, 383, 410, 674
DdeI	CTNAG	2 cut(s)	217, 593
DpnI	GATC	2 cut(s)	440, 746
DpnII	GATC	2 cut(s)	438, 744
EaeI	YGGCCR	2 cut(s)	63, 122
Eco47I	GGWCC	2 cut(s)	131, 512
Eco57I	CTGAAG	2 cut(s)	335, 694
EcoT22I	ATGCAT	1 cut(s)	57
FaeI	CATG	6 cut(s)	55, 101, 362, 394, 627, 640
FaqI	GGGAC	3 cut(s)	117, 434, 498
FatI	CATG	6 cut(s)	51, 97, 358, 390, 623, 636
FauNDI	CATATG	4 cut(s)	127, 184, 234, 543
Fnu4HI	GCNGC	7 cut(s)	12, 122, 147, 432, 501, 666, 779
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	7 cut(s)	12, 122, 147, 432, 501, 666, 779
FspBI	CTAG	2 cut(s)	30, 281
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	7 cut(s)	12, 122, 147, 432, 501, 666, 779
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	3 cut(s)	50, 65, 124
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	6 cut(s)	55, 101, 362, 394, 627, 640
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	4 cut(s)	172, 222, 305, 564
HpaII	CCGG	1 cut(s)	561
Hpy166II	GTNNAC	2 cut(s)	538, 833
Hpy188I	TCNGA	3 cut(s)	202, 252, 484
Hpy188III	TCNNGA	6 cut(s)	98, 309, 326, 359, 391, 797
Hpy8I	GTNNAC	2 cut(s)	538, 833
HpyAV	CCTTC	3 cut(s)	145, 397, 584
HpyCH4III	ACNGT	2 cut(s)	701, 815
HpyCH4IV	ACGT	2 cut(s)	313, 570
HpyCH4V	TGCA	4 cut(s)	55, 71, 431, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 339, 428, 784
HpyF3I	CTNAG	2 cut(s)	217, 593
HpySE526I	ACGT	2 cut(s)	313, 570
Hsp92II	CATG	6 cut(s)	55, 101, 362, 394, 627, 640
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	438, 744
Lsp1109I	GCAGC	3 cut(s)	133, 443, 765
MaeI	CTAG	2 cut(s)	30, 281
MaeII	ACGT	2 cut(s)	313, 570
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	2 cut(s)	440, 746
MboI	GATC	2 cut(s)	438, 744
MboII	GAAGA	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	1 cut(s)	731
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	166, 216
MmeI	TCCRAC	1 cut(s)	67
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	4 cut(s)	378, 599, 684, 804
MslI	CAYNNNNRTG	3 cut(s)	183, 233, 378
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	20, 339, 428, 784
NciI	CCSGG	1 cut(s)	561
NdeI	CATATG	4 cut(s)	127, 184, 234, 543
NdeII	GATC	2 cut(s)	438, 744
NlaIII	CATG	6 cut(s)	55, 101, 362, 394, 627, 640
NlaIV	GGNNCC	2 cut(s)	133, 514
NmuCI	GTSAC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	57
PagI	TCATGA	3 cut(s)	97, 358, 390
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	305, 564
PflMI	CCANNNNNTGG	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	7 cut(s)	13, 123, 148, 433, 502, 667, 780
PleI	GAGTC	2 cut(s)	166, 216
PpsI	GAGTC	2 cut(s)	166, 216
PspFI	CCCAGC	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	133, 514
PspPI	GGNCC	2 cut(s)	131, 512
RsaI	GTAC	4 cut(s)	338, 384, 411, 675
RsaNI	GTAC	4 cut(s)	337, 383, 410, 674
RseI	CAYNNNNRTG	3 cut(s)	183, 233, 378
SaqAI	TTAA	4 cut(s)	378, 599, 684, 804
SatI	GCNGC	7 cut(s)	12, 122, 147, 432, 501, 666, 779
Sau3AI	GATC	2 cut(s)	438, 744
Sau96I	GGNCC	2 cut(s)	131, 512
SchI	GAGTC	2 cut(s)	166, 216
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	753
SinI	GGWCC	2 cut(s)	131, 512
SmiMI	CAYNNNNRTG	3 cut(s)	183, 233, 378
Sse9I	AATT	1 cut(s)	731
SsiI	CCGC	5 cut(s)	33, 121, 340, 500, 666
SspMI	CTAG	2 cut(s)	30, 281
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	701, 815
TaiI	ACGT	2 cut(s)	316, 573
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	731
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	3 cut(s)	124, 503, 668
TfiI	GAWTC	2 cut(s)	305, 564
Tru1I	TTAA	4 cut(s)	378, 599, 684, 804
Tru9I	TTAA	4 cut(s)	378, 599, 684, 804
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	4 cut(s)	11, 146, 431, 778
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	6 cut(s)	86, 102, 114, 347, 375, 379
TspRI	CASTG	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	131, 512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	2 cut(s)	30, 281
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.