pycom13g13110

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
9282553 .. 9285983
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1293 bp
ATGAGGACATTTGGCCCAGAGAATGATAACAAGCCTGTTTTTGTTGTGGTTAATGCTTGCTCTAGCAAGGATTACGCTAATAACATAGTTGGAGTTTGCTTTGTTGGTCAGGATGTTACCGGTCAAAAAGTAGTAATGGACAAATTCATAAAAATACAAGGTGATTACAAGGCCATTGTTCATAGCCCCAATCCTTTGATCCCACCCATATTTGCTTCAGATGATAACACATGTTGCTCGGAATGGAACGCTGCCATGGCAAAGCTCACTGGGTGGAGCCACGGAGAAATCCTTGGAAAAATGTTGGTTGGAGAGGTCTTTGGCAGTTGCTGTCGTATCAAGGGTCCAGATGCTATGACAAAATTCATGATTGTCTTGCACAATGCCATCGAAGGGCTAGACACAGATAAATTCCCCTTTTCCTTCTTTGACCGGAATGGGAAATATGTACAAGCTCTCTTGACAGCGAATAAGAGGGTGAATACGGAAGGTCAGGTTATTGGAGCTTTCTGCTTTGTGCAGATTGCTAGTCCAGAACTGCAGCAGGCTCTTAATGTTCAGAGGCAACAGGAAAAGGAATGTTTATCTAAGATGAAAGAATTGGCTTACATTTGCCAGGAAGTAAAAAATCCTTTAAGCGGTATACGTTTTACTAACTCACTTTTGGAGGCTACAGACTTAACTGAAGATCAAAGGCAGTTTCTGGAGACTGGTGCTGCTTGTGAGAAGCAAATTTTGAAGATTATAAAAGATGTAGATCTGGATAGCATTGACAATGGATCATTGGAGCTTGAGAAGGCAGAATTCTTACTTGGGGGTGTCATAAATGCTGTTGTTAGCCAAGTAATGTTATTGATGAGAGAAAGAGATCTACAGTTGATTCGGGATATTCCTGAAGAAATCAAAACATTGGCTGTTTATGGTGATCAAGTGAGAATTCAGCAGATCTTGGCCGATTTCTTATTGAATATGGTACGTTATGCACCCTCTCCTGAAGGCTGGGTGGAGATTCATGTTCTTCCAATCTTGAAGAAAGTACCTGATGGAATCACTCTGGTTCGTACTGAATTCAGGTTGGTATGCCCTGGTGAAGGTCTTCCTCCTCAATTAGTTCAAGACATGTTCCATAGCAGTCAATGGATGACTCAGGAGGGACTAGGACTGAGCATGTGCAGAAAGATTTTAAAGCTCATGAATGGTGATGTCCAATATATCAGAGAGTCCGAAAGATGTTATTTCTTAATTACTCTCGAGCTTCCTATGCCTCGGAGACCGACAAATAGTATTGACTAG

Protein Analysis

431

Amino Acids

48.29

Weight (kDa)

5.32

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS PF00989 55 - 174 3.8e-19 PAS fold
HisKA PF00512 198 - 260 3.4e-13 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 308 - 419 5.1e-14 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AccI GTMKAC 1 cut(s) 643
AciI CCGC 1 cut(s) 639
AclWI GGATC 2 cut(s) 193, 787
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 7 cut(s) 143, 362, 410, 732, 803, 936, 1067
AcuI CTGAAG 4 cut(s) 201, 705, 915, 1014
AdeI CACNNNGTG 1 cut(s) 273
AfaI GTAC 4 cut(s) 450, 975, 1038, 1063
AfiI CCNNNNNNNGG 3 cut(s) 393, 638, 1091
AflIII ACRYGT 2 cut(s) 230, 1119
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 4 cut(s) 739, 967, 1030, 1115
AjnI CCWGG 2 cut(s) 615, 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 795, 827
AluBI AGCT 6 cut(s) 265, 455, 506, 790, 1189, 1255
AluI AGCT 6 cut(s) 265, 455, 506, 790, 1189, 1255
Alw26I GTCTC 2 cut(s) 701, 1264
AlwI GGATC 2 cut(s) 193, 787
AlwNI CAGNNNCTG 2 cut(s) 330, 703
Ama87I CYCGRG 1 cut(s) 1250
AoxI GGCC 3 cut(s) 13, 171, 951
ApeKI GCWGC 3 cut(s) 251, 541, 716
ApoI RAATTY 7 cut(s) 143, 362, 410, 732, 803, 936, 1067
AsiGI ACCGGT 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 1095
AspS9I GGNCC 2 cut(s) 14, 344
AsuHPI GGTGA 5 cut(s) 173, 490, 935, 1100, 1211
AvaI CYCGRG 1 cut(s) 1250
AvaII GGWCC 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 1088
BbvI GCAGC 3 cut(s) 238, 553, 703
BccI CCATC 2 cut(s) 395, 1037
BciT130I CCWGG 2 cut(s) 617, 1086
BclI TGATCA 1 cut(s) 925
BcoDI GTCTC 2 cut(s) 701, 1264
BfaI CTAG 5 cut(s) 63, 398, 528, 1157, 1291
BfmI CTRYAG 3 cut(s) 539, 672, 872
BglII AGATCT 3 cut(s) 757, 868, 945
BisI GCNGC 3 cut(s) 252, 542, 717
BlsI GCNGC 3 cut(s) 253, 543, 718
Bme1390I CCNGG 2 cut(s) 617, 1086
Bme18I GGWCC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 1250
BmgT120I GGNCC 2 cut(s) 14, 344
BmiI GGNNCC 2 cut(s) 278, 345
BmrFI CCNGG 2 cut(s) 617, 1086
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 1088
BpmI CTGGAG 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 1264
BsaJI CCNNGG 5 cut(s) 255, 280, 292, 1084, 1265
BsaWI WCCGGW 2 cut(s) 119, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 638, 1091
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 274, 715
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 2 cut(s) 617, 1086
BseDI CCNNGG 5 cut(s) 255, 280, 292, 1084, 1265
BseGI GGATG 2 cut(s) 118, 1146
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 393, 638, 1091
BseMII CTCAG 2 cut(s) 1154, 1160
BseNI ACTGG 2 cut(s) 274, 715
BseRI GAGGAG 1 cut(s) 1092
BseXI GCAGC 3 cut(s) 238, 553, 703
BseYI CCCAGC 1 cut(s) 999
BsgI GTGCAG 2 cut(s) 539, 1192
BshFI GGCC 3 cut(s) 15, 173, 953
BshTI ACCGGT 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 1250
BsiSI CCGG 2 cut(s) 120, 433
BslFI GGGAC 1 cut(s) 1167
BslI CCNNNNNNNGG 3 cut(s) 393, 638, 1091
BsmAI GTCTC 2 cut(s) 701, 1264
BsmFI GGGAC 1 cut(s) 1167
BsnI GGCC 3 cut(s) 15, 173, 953
Bso31I GGTCTC 1 cut(s) 1264
BsoBI CYCGRG 1 cut(s) 1250
Bsp1407I TGTACA 1 cut(s) 448
Bsp143I GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 1 cut(s) 639
BspANI GGCC 3 cut(s) 15, 173, 953
BspCNI CTCAG 2 cut(s) 1155, 1159
BspHI TCATGA 2 cut(s) 366, 1191
BspLI GGNNCC 2 cut(s) 278, 345
BspMAI CTGCAG 1 cut(s) 543
BspPI GGATC 2 cut(s) 193, 787
BspTNI GGTCTC 1 cut(s) 1264
BsrFI RCCGGY 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 448
BsrI ACTGG 2 cut(s) 274, 715
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 5 cut(s) 255, 280, 292, 1084, 1265
BssMI GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
BssNAI GTATAC 1 cut(s) 644
BssT1I CCWWGG 2 cut(s) 255, 292
Bst1107I GTATAC 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 617, 1086
Bst4CI ACNGT 1 cut(s) 876
BstAUI TGTACA 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 58, 546
BstDEI CTNAG 3 cut(s) 588, 1146, 1163
BstDSI CCRYGG 2 cut(s) 255, 280
BstENI CCTNNNNNAGG 1 cut(s) 1089
BstF5I GGATG 2 cut(s) 118, 1146
BstKTI GATC 7 cut(s) 201, 691, 760, 782, 871, 928, 948
BstMAI GTCTC 2 cut(s) 701, 1264
BstMBI GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
BstMWI GCNNNNNNNGC 2 cut(s) 257, 1261
BstNI CCWGG 2 cut(s) 617, 1086
BstNSI RCATGY 3 cut(s) 234, 1123, 1171
BstSCI CCNGG 2 cut(s) 615, 1084
BstSFI CTRYAG 3 cut(s) 539, 672, 872
BstV1I GCAGC 3 cut(s) 238, 553, 703
BstV2I GAAGAC 1 cut(s) 1088
BstX2I RGATCY 3 cut(s) 757, 868, 945
BstYI RGATCY 3 cut(s) 757, 868, 945
BstZ17I GTATAC 1 cut(s) 644
BsuRI GGCC 3 cut(s) 15, 173, 953
BtgI CCRYGG 2 cut(s) 255, 280
BtsCI GGATG 2 cut(s) 118, 1146
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 58, 546
CaiI CAGNNNCTG 2 cut(s) 330, 703
CciI TCATGA 2 cut(s) 366, 1191
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 14, 344
Csp6I GTAC 4 cut(s) 449, 974, 1037, 1062
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 7 cut(s) 231, 256, 367, 1013, 1120, 1168, 1192
CviQI GTAC 4 cut(s) 449, 974, 1037, 1062
DdeI CTNAG 3 cut(s) 588, 1146, 1163
DpnI GATC 7 cut(s) 200, 690, 759, 781, 870, 927, 947
DpnII GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
DraI TTTAAA 1 cut(s) 1185
DraIII CACNNNGTG 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 951
Eco130I CCWWGG 2 cut(s) 255, 292
Eco31I GGTCTC 1 cut(s) 1264
Eco47I GGWCC 1 cut(s) 344
Eco57I CTGAAG 4 cut(s) 201, 705, 915, 1014
Eco88I CYCGRG 1 cut(s) 1250
EcoNI CCTNNNNNAGG 1 cut(s) 1089
EcoRI GAATTC 3 cut(s) 803, 936, 1067
EcoRII CCWGG 2 cut(s) 615, 1084
EcoT14I CCWWGG 2 cut(s) 255, 292
ErhI CCWWGG 2 cut(s) 255, 292
FaeI CATG 7 cut(s) 234, 259, 370, 1016, 1123, 1171, 1195
FaqI GGGAC 1 cut(s) 1167
FatI CATG 7 cut(s) 230, 255, 366, 1012, 1119, 1167, 1191
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 1 cut(s) 643
Fnu4HI GCNGC 3 cut(s) 252, 542, 717
FokI GGATG 2 cut(s) 125, 1153
Fsp4HI GCNGC 3 cut(s) 252, 542, 717
FspBI CTAG 5 cut(s) 63, 398, 528, 1157, 1291
GluI GCNGC 3 cut(s) 252, 542, 717
GsaI CCCAGC 1 cut(s) 1003
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 3 cut(s) 15, 173, 953
HapII CCGG 2 cut(s) 120, 433
Hin1II CATG 7 cut(s) 234, 259, 370, 1016, 1123, 1171, 1195
HinfI GANTC 5 cut(s) 880, 1009, 1047, 1144, 1220
HpaII CCGG 2 cut(s) 120, 433
HphI GGTGA 5 cut(s) 173, 490, 935, 1100, 1211
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 6 cut(s) 220, 241, 561, 1217, 1225, 1269
Hpy8I GTNNAC 1 cut(s) 644
HpyAV CCTTC 6 cut(s) 386, 433, 482, 790, 989, 1085
HpyCH4III ACNGT 1 cut(s) 876
HpyCH4IV ACGT 2 cut(s) 646, 976
HpyCH4V TGCA 5 cut(s) 379, 520, 541, 983, 1173
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 1261
HpyF3I CTNAG 3 cut(s) 588, 1146, 1163
HpySE526I ACGT 2 cut(s) 646, 976
Hsp92II CATG 7 cut(s) 234, 259, 370, 1016, 1123, 1171, 1195
Ksp22I TGATCA 1 cut(s) 925
Kzo9I GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
LmnI GCTCC 3 cut(s) 276, 503, 787
Lsp1109I GCAGC 3 cut(s) 238, 553, 703
LweI GCATC 1 cut(s) 340
MaeI CTAG 5 cut(s) 63, 398, 528, 1157, 1291
MaeII ACGT 2 cut(s) 646, 976
MaeIII GTNAC 1 cut(s) 115
MalI GATC 7 cut(s) 200, 690, 759, 781, 870, 927, 947
MboI GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
MboII GAAGA 6 cut(s) 698, 751, 908, 1010, 1042, 1088
MflI RGATCY 3 cut(s) 757, 868, 945
MlyI GAGTC 2 cut(s) 1138, 1229
MmeI TCCRAC 2 cut(s) 70, 289
MnlI CCTC 9 cut(s) 307, 468, 555, 661, 997, 1110, 1113, 1144, 1275
MroXI GAANNNNTTC 1 cut(s) 1095
MseI TTAA 6 cut(s) 51, 552, 635, 680, 1184, 1241
MspI CCGG 2 cut(s) 120, 433
MspR9I CCNGG 2 cut(s) 617, 1086
MvaI CCWGG 2 cut(s) 617, 1086
MwoI GCNNNNNNNGC 2 cut(s) 257, 1261
NcoI CCATGG 1 cut(s) 255
NdeII GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
NlaIII CATG 7 cut(s) 234, 259, 370, 1016, 1123, 1171, 1195
NlaIV GGNNCC 2 cut(s) 278, 345
NspI RCATGY 3 cut(s) 234, 1123, 1171
PaeR7I CTCGAG 1 cut(s) 1250
PagI TCATGA 2 cut(s) 366, 1191
PciI ACATGT 2 cut(s) 230, 1119
PdmI GAANNNNTTC 1 cut(s) 1095
PfeI GAWTC 3 cut(s) 880, 1009, 1047
PinAI ACCGGT 1 cut(s) 119
PkrI GCNGC 3 cut(s) 253, 543, 718
PleI GAGTC 2 cut(s) 1138, 1228
PpsI GAGTC 2 cut(s) 1138, 1228
PscI ACATGT 2 cut(s) 230, 1119
PsiI TTATAA 1 cut(s) 746
Psp6I CCWGG 2 cut(s) 615, 1084
PspFI CCCAGC 1 cut(s) 999
PspGI CCWGG 2 cut(s) 615, 1084
PspN4I GGNNCC 2 cut(s) 278, 345
PspPI GGNCC 2 cut(s) 14, 344
PstI CTGCAG 1 cut(s) 543
PstNI CAGNNNCTG 2 cut(s) 330, 703
PsuI RGATCY 3 cut(s) 757, 868, 945
RsaI GTAC 4 cut(s) 450, 975, 1038, 1063
RsaNI GTAC 4 cut(s) 449, 974, 1037, 1062
SaqAI TTAA 6 cut(s) 51, 552, 635, 680, 1184, 1241
SatI GCNGC 3 cut(s) 252, 542, 717
Sau3AI GATC 7 cut(s) 198, 688, 757, 779, 868, 925, 945
Sau96I GGNCC 2 cut(s) 14, 344
SchI GAGTC 2 cut(s) 1138, 1229
ScrFI CCNGG 2 cut(s) 617, 1086
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 3 cut(s) 539, 672, 872
Sfr274I CTCGAG 1 cut(s) 1250
SinI GGWCC 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 1250
SmlI CTYRAG 2 cut(s) 791, 1250
SmoI CTYRAG 2 cut(s) 791, 1250
SsiI CCGC 1 cut(s) 639
SspMI CTAG 5 cut(s) 63, 398, 528, 1157, 1291
StyD4I CCNGG 2 cut(s) 615, 1084
StyI CCWWGG 2 cut(s) 255, 292
TaaI ACNGT 1 cut(s) 876
TaiI ACGT 2 cut(s) 649, 979
TaqI TCGA 2 cut(s) 390, 1251
TaqII GACCGA 1 cut(s) 1288
TatI WGTACW 1 cut(s) 448
TfiI GAWTC 3 cut(s) 880, 1009, 1047
Tru1I TTAA 6 cut(s) 51, 552, 635, 680, 1184, 1241
Tru9I TTAA 6 cut(s) 51, 552, 635, 680, 1184, 1241
TscAI CASTG 1 cut(s) 274
TseI GCWGC 3 cut(s) 251, 541, 716
TspDTI ATGAA 6 cut(s) 136, 170, 355, 608, 1001, 1208
TspGWI ACGGA 2 cut(s) 297, 500
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 344
XagI CCTNNNNNAGG 1 cut(s) 1089
XapI RAATTY 7 cut(s) 143, 362, 410, 732, 803, 936, 1067
XceI RCATGY 3 cut(s) 234, 1123, 1171
XhoI CTCGAG 1 cut(s) 1250
XmiI GTMKAC 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 1095
XspI CTAG 5 cut(s) 63, 398, 528, 1157, 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.