pycom13g13540

Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0024383
Physical Location & Seq
Reverse (-)
9555433 .. 9556232
800 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGAATCTTTTTGTCGCTCATTCATGGTTACAGGAGGGCGTCGAAAATGTTGTGGTGGTTCATTGTAAAGCTGGTATGGCAAGGACAGGAGTAATGATTTGTAGCCTTCTCTTATTTCTTAAGGTAAGATCAATAATCAGCACCTTAAGACCTGGGGTTGTATGGTGGAAATGTTGGTGCTTCTTTTGGCTTTATATTTCTTGCACTTATGACTATAACTTTTTCTTGTTTGTTTTTCCATGTATCTGCAGTTCTTCCCTACGGCTGAGGAGATACGTCAAATACTTTGAGCGTATCTTAAAACACTTCAATGGAGAAACTCCTCCAGATCGAAGGTACACGTCTGATACACTTCTCCAAAATGTATCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009605 GO:0009628 GO:0009651 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc

Protein Analysis

125

Amino Acids

14.68

Weight (kDa)

9.23

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024383)

Species Orthologous Gene IDs
malus_domestica MD01G1006100.v1.1
pyrus_communis pycom02g14400 pycom13g13540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 338
AflII CTTAAG 2 cut(s) 119, 145
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 310
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 247
BfrI CTTAAG 2 cut(s) 119, 145
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 257
BseRI GAGGAG 2 cut(s) 283, 312
Bsp143I GATC 2 cut(s) 128, 328
BspCNI CTCAG 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 251
BspTI CTTAAG 2 cut(s) 119, 145
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 2 cut(s) 128, 328
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 39
BstAFI CTTAAG 2 cut(s) 119, 145
BstDEI CTNAG 1 cut(s) 266
BstKTI GATC 2 cut(s) 131, 331
BstMBI GATC 2 cut(s) 128, 328
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 247
BtrI CACGTC 1 cut(s) 342
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 24, 240
CviJI RGCY 4 cut(s) 71, 105, 190, 265
CviKI_1 RGCY 4 cut(s) 71, 105, 190, 265
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 130, 330
DpnII GATC 2 cut(s) 128, 328
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 27, 243
FaiI YATR 7 cut(s) 25, 77, 163, 195, 210, 216, 241
FatI CATG 2 cut(s) 23, 239
GsuI CTGGAG 1 cut(s) 309
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 27, 243
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 2 cut(s) 346, 374
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 116, 327
HpyCH4IV ACGT 2 cut(s) 276, 341
HpyCH4V TGCA 2 cut(s) 204, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 2 cut(s) 276, 341
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 27, 243
Kzo9I GATC 2 cut(s) 128, 328
LpnPI CCDG 6 cut(s) 17, 57, 72, 138, 165, 339
MaeII ACGT 2 cut(s) 276, 341
MaeIII GTNAC 1 cut(s) 27
MalI GATC 2 cut(s) 130, 330
MboI GATC 2 cut(s) 128, 328
MboII GAAGA 1 cut(s) 246
MnlI CCTC 3 cut(s) 28, 261, 333
MseI TTAA 3 cut(s) 120, 146, 299
MslI CAYNNNNRTG 1 cut(s) 309
MspCI CTTAAG 2 cut(s) 119, 145
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 128, 328
NlaIII CATG 2 cut(s) 27, 243
PfeI GAWTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
PstI CTGCAG 1 cut(s) 251
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 3 cut(s) 120, 146, 299
Sau3AI GATC 2 cut(s) 128, 328
ScrFI CCNGG 1 cut(s) 153
SetI ASST 7 cut(s) 73, 126, 146, 154, 279, 338, 344
SfcI CTRYAG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 2 cut(s) 119, 145
SmoI CTYRAG 2 cut(s) 119, 145
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 2 cut(s) 279, 344
TaqI TCGA 2 cut(s) 42, 331
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 120, 146, 299
Tru9I TTAA 3 cut(s) 120, 146, 299
TspDTI ATGAA 3 cut(s) 12, 17, 50
Vha464I CTTAAG 2 cut(s) 119, 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.