pycom13g13720

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
9724925 .. 9725656
732 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
ATGAGGTGTGATCGATCTAAAGCACTAATTGGTAAGCACAAGAAAAAATTGAGCTTGCGTAAACCTTTTGATCCACCTTCTGCCTCAGCCTATAAATACCAATATCCTCCTCACTTCTTCACAACTCAAAATCTCCCAATACATCATCTTTCTTTCTTAGTTTTCCTCTTCGTCGATTATTTTCCCACTTCACATACACATCTCAGAAGCATGGGTGTTTTCACGTACGAATCCGAGTTCACTTCCGTCATCCCCCCCACTAGGTTGTACAATGCCTTTGTTCTTGATGCTGACAACCTCATCCCCAAGATTGCACCACAGGCAGTGAAGAGCACTGAGATCCTTGAAGGAGATGGCGGAGTTGGAACCATTAAGAAGATCAACTTCGGTGAAGGTAGCACATACAACTATGTCAAGCATAGAATCGATGGAGTTGACAAGGACAACTTTGTGTACAAGTACAGTCGGTTGCGTCATCAAGAGCACCAGCCACTACCACACCAAGGGAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

172

Amino Acids

19.7

Weight (kDa)

9.47

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 71 - 157 5e-14 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 357
AclWI GGATC 2 cut(s) 65, 334
AfaI GTAC 4 cut(s) 227, 269, 455, 461
AfiI CCNNNNNNNGG 2 cut(s) 261, 503
AgsI TTSAA 1 cut(s) 347
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw21I GWGCWC 2 cut(s) 335, 486
AlwI GGATC 2 cut(s) 65, 334
AsuHPI GGTGA 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 335, 486
BbvCI CCTCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 347, 422
BfaI CTAG 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 367
BmsI GCATC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 85
Bsa29I ATCGAT 2 cut(s) 13, 426
BsaAI YACGTR 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 503
BseCI ATCGAT 2 cut(s) 13, 426
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 2 cut(s) 249, 300
BseLI CCNNNNNNNGG 2 cut(s) 261, 503
BseMII CTCAG 3 cut(s) 99, 217, 327
BseRI GAGGAG 1 cut(s) 99
BshVI ATCGAT 2 cut(s) 13, 426
BsiHKAI GWGCWC 2 cut(s) 335, 486
BsiWI CGTACG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 261, 503
Bsp1286I GDGCHC 2 cut(s) 335, 486
Bsp1407I TGTACA 2 cut(s) 267, 453
Bsp143I GATC 5 cut(s) 10, 14, 70, 339, 378
BspACI CCGC 1 cut(s) 357
BspCNI CTCAG 3 cut(s) 98, 216, 328
BspDI ATCGAT 2 cut(s) 13, 426
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 65, 334
BspQI GCTCTTC 1 cut(s) 323
BsrGI TGTACA 2 cut(s) 267, 453
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 5 cut(s) 10, 14, 70, 339, 378
BssT1I CCWWGG 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 2 cut(s) 173, 323
BstAUI TGTACA 2 cut(s) 267, 453
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 4 cut(s) 85, 157, 203, 336
BstF5I GGATG 2 cut(s) 249, 300
BstKTI GATC 5 cut(s) 13, 17, 73, 342, 381
BstMBI GATC 5 cut(s) 10, 14, 70, 339, 378
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu15I ATCGAT 2 cut(s) 13, 426
BsuTUI ATCGAT 2 cut(s) 13, 426
BtsCI GGATG 2 cut(s) 249, 300
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 330, 333
Cac8I GCNNGC 1 cut(s) 56
ClaI ATCGAT 2 cut(s) 13, 426
CseI GACGC 1 cut(s) 461
Csp6I GTAC 4 cut(s) 226, 268, 454, 460
CviAII CATG 1 cut(s) 211
CviJI RGCY 3 cut(s) 54, 89, 490
CviKI_1 RGCY 3 cut(s) 54, 89, 490
CviQI GTAC 4 cut(s) 226, 268, 454, 460
DdeI CTNAG 4 cut(s) 85, 157, 203, 336
DpnI GATC 5 cut(s) 12, 16, 72, 341, 380
DpnII GATC 5 cut(s) 10, 14, 70, 339, 378
Eam1104I CTCTTC 2 cut(s) 173, 323
EarI CTCTTC 2 cut(s) 173, 323
EciI GGCGGA 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 1 cut(s) 214
FaiI YATR 6 cut(s) 93, 195, 212, 403, 411, 420
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 431, 463
FatI CATG 1 cut(s) 210
FokI GGATG 2 cut(s) 236, 287
FspBI CTAG 1 cut(s) 261
HgaI GACGC 1 cut(s) 461
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 230, 423
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 4 cut(s) 62, 240, 436, 454
Hpy188I TCNGA 2 cut(s) 206, 235
Hpy188III TCNNGA 2 cut(s) 284, 479
Hpy8I GTNNAC 4 cut(s) 62, 240, 436, 454
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 87, 341, 386
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 4 cut(s) 85, 157, 203, 336
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 1 cut(s) 214
Kzo9I GATC 5 cut(s) 10, 14, 70, 339, 378
LguI GCTCTTC 1 cut(s) 323
LpnPI CCDG 2 cut(s) 305, 500
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 224
MalI GATC 5 cut(s) 12, 16, 72, 341, 380
MboI GATC 5 cut(s) 10, 14, 70, 339, 378
MboII GAAGA 4 cut(s) 109, 160, 340, 388
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 335, 486
MluCI AATT 2 cut(s) 27, 47
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 5 cut(s) 94, 117, 120, 176, 308
MseI TTAA 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 5 cut(s) 10, 14, 70, 339, 378
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 230, 423
Pfl23II CGTACG 1 cut(s) 225
Ppu21I YACGTR 1 cut(s) 225
PspLI CGTACG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 367
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 4 cut(s) 227, 269, 455, 461
RsaNI GTAC 4 cut(s) 226, 268, 454, 460
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 5 cut(s) 10, 14, 70, 339, 378
SduI GDGCHC 2 cut(s) 335, 486
SetI ASST 8 cut(s) 8, 56, 67, 79, 227, 266, 300, 397
SfaNI GCATC 1 cut(s) 277
Sse9I AATT 2 cut(s) 27, 47
SsiI CCGC 1 cut(s) 357
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 227
TaqI TCGA 3 cut(s) 13, 174, 426
TasI AATT 2 cut(s) 27, 47
TatI WGTACW 3 cut(s) 267, 453, 459
TfiI GAWTC 2 cut(s) 230, 423
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 330, 340
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 2 cut(s) 330, 340
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.