Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10660364 .. 10661653

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGGCCGCGCAGCGGAAGATCCCTCCGGCCTCTTCCATGCTCTGGGTCCGTAACCTCCGCCGCTTCATCGGATCCGGTGCCGGACTCGGATCCGAAGCCCTCATGGCTTGAAACAAAGAGAATCTTGCTTGATATTTTCAAAGAGAAGCAACAAAAAAGTGCTGAAGCTGGCACAATCCCGAGTTTTTACAAGAAGAAACCTGAAGAAGGATCTATTAGTCAGAGGGTCCAGGGGCTGGCAAAATATCGGTTTTTAAAGCAGATCTTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0000913 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0016043 GO:0016049 GO:0022402 GO:0022607 GO:0030865 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051301 GO:0060560 GO:0061640 GO:0071840 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

92

Amino Acids

10.18

Weight (kDa)

9.88

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccB7I	CCANNNNNTGG	2 cut(s)	44, 238
AccII	CGCG	1 cut(s)	10
AciI	CCGC	4 cut(s)	8, 15, 60, 63
AclWI	GGATC	6 cut(s)	15, 68, 81, 86, 99, 220
AcuI	CTGAAG	2 cut(s)	186, 225
AfiI	CCNNNNNNNGG	4 cut(s)	14, 44, 209, 238
AgsI	TTSAA	2 cut(s)	113, 142
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AlwI	GGATC	6 cut(s)	15, 68, 81, 86, 99, 220
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	5, 29
ApeKI	GCWGC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	48, 229
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	48, 229
BamHI	GGATCC	2 cut(s)	73, 91
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	233
BglI	GCCNNNNNGGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	3 cut(s)	8, 13, 63
BlsI	GCNGC	3 cut(s)	9, 14, 64
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	48, 229
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	48, 229
BmiI	GGNNCC	5 cut(s)	49, 75, 81, 93, 230
BmrFI	CCNGG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 44, 209, 238
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	4 cut(s)	14, 44, 209, 238
BseXI	GCAGC	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	7, 31
BshNI	GGYRCC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	28, 77, 83
BslI	CCNNNNNNNGG	4 cut(s)	14, 44, 209, 238
BsnI	GGCC	2 cut(s)	7, 31
BsoBI	CYCGRG	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	20, 73, 91, 212, 264
BspACI	CCGC	4 cut(s)	8, 15, 60, 63
BspANI	GGCC	2 cut(s)	7, 31
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	5 cut(s)	49, 75, 81, 93, 230
BspPI	GGATC	6 cut(s)	15, 68, 81, 86, 99, 220
BspT107I	GGYRCC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	5 cut(s)	20, 73, 91, 212, 264
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	172, 240
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	23, 76, 94, 215, 267
BstMBI	GATC	5 cut(s)	20, 73, 91, 212, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	24
BstX2I	RGATCY	5 cut(s)	20, 73, 91, 212, 264
BstYI	RGATCY	5 cut(s)	20, 73, 91, 212, 264
BsuRI	GGCC	2 cut(s)	7, 31
Cac8I	GCNNGC	2 cut(s)	172, 240
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	48, 229
CviAII	CATG	2 cut(s)	39, 105
CviJI	RGCY	6 cut(s)	7, 31, 100, 109, 170, 238
CviKI_1	RGCY	6 cut(s)	7, 31, 100, 109, 170, 238
DpnI	GATC	5 cut(s)	22, 75, 93, 214, 266
DpnII	GATC	5 cut(s)	20, 73, 91, 212, 264
DraI	TTTAAA	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	48, 229
Eco57I	CTGAAG	2 cut(s)	186, 225
Eco88I	CYCGRG	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	42, 108
FaiI	YATR	2 cut(s)	40, 106
FalI	AAGNNNNNCTT	3 cut(s)	110, 142, 251
FatI	CATG	2 cut(s)	38, 104
Fnu4HI	GCNGC	3 cut(s)	8, 13, 63
Fsp4HI	GCNGC	3 cut(s)	8, 13, 63
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	3 cut(s)	8, 13, 63
HaeIII	GGCC	2 cut(s)	7, 31
HapII	CCGG	3 cut(s)	28, 77, 83
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	42, 108
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	86, 123
HpaII	CCGG	3 cut(s)	28, 77, 83
Hpy188I	TCNGA	4 cut(s)	73, 91, 96, 225
Hpy188III	TCNNGA	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	42, 108
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	20, 73, 91, 212, 264
LpnPI	CCDG	9 cut(s)	30, 41, 90, 96, 156, 216, 218, 224, 245
Lsp1109I	GCAGC	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	5 cut(s)	22, 75, 93, 214, 266
MboI	GATC	5 cut(s)	20, 73, 91, 212, 264
MboII	GAAGA	4 cut(s)	26, 30, 208, 218
MflI	RGATCY	5 cut(s)	20, 73, 91, 212, 264
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	35, 42, 67, 112, 219
MseI	TTAA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	3 cut(s)	28, 77, 83
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	5 cut(s)	20, 73, 91, 212, 264
NlaIII	CATG	2 cut(s)	42, 108
NlaIV	GGNNCC	5 cut(s)	49, 75, 81, 93, 230
PfeI	GAWTC	1 cut(s)	123
PflMI	CCANNNNNTGG	2 cut(s)	44, 238
PkrI	GCNGC	3 cut(s)	9, 14, 64
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	5 cut(s)	49, 75, 81, 93, 230
PspPI	GGNCC	2 cut(s)	48, 229
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	5 cut(s)	20, 73, 91, 212, 264
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	3 cut(s)	8, 13, 63
Sau3AI	GATC	5 cut(s)	20, 73, 91, 212, 264
Sau96I	GGNCC	2 cut(s)	48, 229
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	3 cut(s)	59, 172, 205
SinI	GGWCC	2 cut(s)	48, 229
SsiI	CCGC	4 cut(s)	8, 15, 60, 63
StyD4I	CCNGG	1 cut(s)	231
TauI	GCSGC	2 cut(s)	10, 65
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseI	GCWGC	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	40
Van91I	CCANNNNNTGG	2 cut(s)	44, 238
VpaK11BI	GGWCC	2 cut(s)	48, 229
XagI	CCTNNNNNAGG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.