pycom13g14740

acyl-CoA-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
10679988 .. 10680495
508 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGAACCACCTACAAAAAATATTACGTTGCACATGGTTGCTAATGAACCTCTCTCCATTTTTGTTTGCGGAACAGGACTATCTGCGAGGTCCAACCACGTAGCAGCTCTTTATGATGATAAAACTCTTTTTATATTTGGAGGCACATCAAAATCCAAGACTTTGAATCATTTGTGTACGATGGAATTTGAAACTGCGAGTGAATTCTCTCTCATTCTTGTATCTTTTAAACTAGTTCACCAATGGCATGGCTTTTTTTCTCAGATGGAATGGTCAAGAATAAAGAAACAAGGTTTCCGTCCATCTCAAAGAGCTGGTTGCTGTGGCGTCCTATGTGGAACCAAATGGTATATTGTTGGGGGTGGAAGCAGGAAAAAACGTATGCCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.6

Weight (kDa)

9.67

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 20 - 125 3.4e-13 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 30 - 127 3e-08 FBX42, beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AcsI RAATTY 2 cut(s) 185, 203
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 2 cut(s) 166, 191
AhlI ACTAGT 1 cut(s) 232
AluBI AGCT 2 cut(s) 107, 314
AluI AGCT 2 cut(s) 107, 314
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 185, 203
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 116
BccI CCATC 3 cut(s) 175, 259, 310
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 6, 340
BsaAI YACGTR 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 327
BseMII CTCAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 116
BspACI CCGC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 6, 340
BssNI GRCGYC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 90
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 177
CviAII CATG 2 cut(s) 34, 248
CviJI RGCY 3 cut(s) 107, 252, 314
CviKI_1 RGCY 3 cut(s) 107, 252, 314
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 261
DraI TTTAAA 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 203
FaeI CATG 2 cut(s) 37, 251
FaiI YATR 7 cut(s) 35, 114, 134, 249, 334, 351, 383
FatI CATG 2 cut(s) 33, 247
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 105
HgaI GACGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 37, 251
HinfI GANTC 1 cut(s) 166
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 177, 238
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 177, 238
HpyCH4IV ACGT 3 cut(s) 26, 99, 379
HpyCH4V TGCA 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 3 cut(s) 26, 99, 379
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 37, 251
LpnPI CCDG 3 cut(s) 60, 300, 355
Lsp1109I GCAGC 1 cut(s) 116
MaeI CTAG 1 cut(s) 233
MaeII ACGT 3 cut(s) 26, 99, 379
MluCI AATT 2 cut(s) 185, 203
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 3 cut(s) 60, 81, 134
MseI TTAA 1 cut(s) 228
NlaIII CATG 2 cut(s) 37, 251
NlaIV GGNNCC 2 cut(s) 6, 340
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 6, 340
PspPI GGNCC 1 cut(s) 90
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 90
SetI ASST 9 cut(s) 13, 29, 52, 92, 102, 109, 295, 316, 382
SinI GGWCC 1 cut(s) 90
SpeI ACTAGT 1 cut(s) 232
Sse9I AATT 2 cut(s) 185, 203
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 233
TaiI ACGT 3 cut(s) 29, 102, 382
TasI AATT 2 cut(s) 185, 203
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 90
XapI RAATTY 2 cut(s) 185, 203
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.