Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10788812 .. 10789273

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTTGGAGATGGGAAGTTGTGTGCTTGCAAGCCAATCAGCGAGGCGGATTTGGCTTCGTTTATTGCGGATTGTGTGTTGAGTGAGAACAAGATTAACCAGGTTTTGCCTATCGGAGGACCGGGTAAGGCGTTGACGCCCTTGGAGCAAGGGGAGTTGCTGTTTAGACTTGTGGGAAGGGAACCCAAGTTCTTGAAGGTGCCAATTGAAATTATGGACTTTGCTATTGGGGTTCTCGATTTCCTTGTAAGGGTATTTCCTTCAATGGAAGATACTGCTGAGTTCGGGAAGATTGGAAGGTATTATGCAGCTGAGAGTATGTTGGTTTTGGATCCTGAGACGGGAGAATACAATGCTGAGAAAACGCCAAGTTATGGCAAAGACACATTGGAAGAATTCTTTGAGACAGTGCTGAGGGAGGGGATGGCCGGTCAGGAATTAGGCGAACAAACGATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0051744 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

154

Amino Acids

16.87

Weight (kDa)

4.41

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	374
AciI	CCGC	2 cut(s)	47, 68
AclWI	GGATC	2 cut(s)	326, 339
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	4 cut(s)	116, 250, 341, 374
AgsI	TTSAA	3 cut(s)	196, 209, 264
AjnI	CCWGG	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	332, 398
AlwI	GGATC	2 cut(s)	326, 339
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	2 cut(s)	5, 418
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	332, 398
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	101, 123
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	183, 201, 333
BmrFI	CCNGG	2 cut(s)	101, 123
Bpu10I	CCTNAGC	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 250, 341, 374
Bse118I	RCCGGY	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	4 cut(s)	116, 250, 341, 374
BseMII	CTCAG	5 cut(s)	270, 303, 327, 348, 404
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	122, 429
BslI	CCNNNNNNNGG	4 cut(s)	116, 250, 341, 374
BsmAI	GTCTC	2 cut(s)	332, 398
BsmBI	CGTCTC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	47, 68
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	5 cut(s)	271, 304, 328, 349, 405
BspLI	GGNNCC	3 cut(s)	183, 201, 333
BspPI	GGATC	2 cut(s)	326, 339
BspT107I	GGYRCC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	409
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	5 cut(s)	279, 312, 336, 357, 413
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	429
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	332, 398
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 145
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	99, 121
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	28, 32
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	99
CviJI	RGCY	4 cut(s)	34, 56, 311, 428
CviKI_1	RGCY	4 cut(s)	34, 56, 311, 428
DdeI	CTNAG	5 cut(s)	279, 312, 336, 357, 413
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	332
FaiI	YATR	4 cut(s)	215, 306, 320, 375
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	2 cut(s)	122, 429
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	122, 429
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	5 cut(s)	193, 236, 286, 335, 434
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	4 cut(s)	171, 190, 270, 291
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	30, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 145
HpyF3I	CTNAG	5 cut(s)	279, 312, 336, 357, 413
Hsp92I	GRCGYC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	86, 113, 135, 348, 419, 442
Lsp1109I	GCAGC	1 cut(s)	320
MabI	ACCWGGT	1 cut(s)	99
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	281, 301, 404
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	4 cut(s)	204, 210, 395, 437
MnlI	CCTC	4 cut(s)	37, 110, 408, 412
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	2 cut(s)	122, 429
MspR9I	CCNGG	2 cut(s)	101, 123
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	53, 145
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	331
NlaIV	GGNNCC	3 cut(s)	183, 201, 333
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	3 cut(s)	183, 201, 333
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	101, 123
SetI	ASST	4 cut(s)	105, 201, 302, 313
SexAI	ACCWGGT	1 cut(s)	99
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	4 cut(s)	204, 210, 395, 437
SsiI	CCGC	2 cut(s)	47, 68
StyD4I	CCNGG	2 cut(s)	99, 121
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	204, 210, 395, 437
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	1 cut(s)	308
TspRI	CASTG	1 cut(s)	414
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.