pycom13g15340

Cytosolic purine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
11178591 .. 11179851
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGATTCATCAACACAAACTGATTTTGGCATATATACAAAATGAGATAATGTTTAAGCCTGACCAGTTTGTGGTGCCTCATCGAGAATTGCCACTAGCGCTTTTGGATCAAACAACGCTGGTGAAAGGCTTCTGCTCTTCCCAACTCAGATTATCATTACAAACAAAAGGATGCAGCATTGTTCACGTATTCCTTCCCGATGAGATGGGTTGGAGGGATCAAGCTGCCAATCACTGCTCAGTAGGCAAAGCACTATATTCTTTGAAGTACATCGAAACGTTGCTAATGGCGTACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
5_nucleotid

Protein Analysis

100

Amino Acids

11.36

Weight (kDa)

7.77

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 70
AclI AACGTT 1 cut(s) 278
AclWI GGATC 2 cut(s) 114, 225
AfaI GTAC 2 cut(s) 269, 293
AfeI AGCGCT 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 2 cut(s) 114, 225
Aor51HI AGCGCT 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 174, 224
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 133
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 186, 211
BccI CCATC 1 cut(s) 199
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 2 cut(s) 175, 225
BlsI GCNGC 2 cut(s) 176, 226
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 160, 252
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 186, 211
BshNI GGYRCC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp143I GATC 2 cut(s) 106, 217
BspCNI CTCAG 2 cut(s) 159, 251
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 114, 225
BspQI GCTCTTC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 64
BssMI GATC 2 cut(s) 106, 217
Bst6I CTCTTC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 146, 238
BstF5I GGATG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 109, 220
BstMBI GATC 2 cut(s) 106, 217
BstMWI GCNNNNNNNGC 2 cut(s) 97, 243
BstV1I GCAGC 2 cut(s) 186, 211
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 268, 292
CviJI RGCY 3 cut(s) 58, 129, 224
CviKI_1 RGCY 3 cut(s) 58, 129, 224
CviQI GTAC 2 cut(s) 268, 292
DdeI CTNAG 2 cut(s) 146, 238
DpnI GATC 2 cut(s) 108, 219
DpnII GATC 2 cut(s) 106, 217
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco47III AGCGCT 1 cut(s) 99
FaiI YATR 4 cut(s) 31, 33, 35, 256
Fnu4HI GCNGC 2 cut(s) 175, 225
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 175, 225
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 175, 225
HaeII RGCGCY 1 cut(s) 101
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 83, 197
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 203
HpyCH4IV ACGT 2 cut(s) 186, 278
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 243
HpyF3I CTNAG 2 cut(s) 146, 238
HpySE526I ACGT 2 cut(s) 186, 278
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 2 cut(s) 106, 217
LguI GCTCTTC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 72, 77, 104
Lsp1109I GCAGC 2 cut(s) 186, 211
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 186, 278
MalI GATC 2 cut(s) 108, 219
MboI GATC 2 cut(s) 106, 217
MboII GAAGA 1 cut(s) 129
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 2 cut(s) 87, 207
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 97, 243
NdeII GATC 2 cut(s) 106, 217
NlaIV GGNNCC 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 2 cut(s) 176, 226
Ppu21I YACGTR 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 75
RsaI GTAC 2 cut(s) 269, 293
RsaNI GTAC 2 cut(s) 268, 292
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 175, 225
Sau3AI GATC 2 cut(s) 106, 217
SetI ASST 4 cut(s) 189, 226, 281, 297
SfaNI GCATC 1 cut(s) 161
SgeI CNNG 8 cut(s) 71, 76, 95, 107, 131, 197, 209, 233
Sse9I AATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 95
TaiI ACGT 2 cut(s) 189, 281
TaqI TCGA 2 cut(s) 82, 273
TasI AATT 1 cut(s) 86
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 239
TseI GCWGC 2 cut(s) 174, 224
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.