pycom13g15460

Belongs to the adaptor complexes medium subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
11284690 .. 11285465
776 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGCATCCTTGTGTGGAGCCCAGGCATTTGAAGGCATTTGAAGGTAAGTTACCTTCAGTATGCGGTTCTTTTTCTTTTTCGCTTTCCCCTGGTGCTTTCATTGTGGCACATGCTATTGGTGACATAATAACTGGTGATGTGGTGGAACCTGATGTGGTCGTAAGTGCATCCCCATCTGTCGGAGGATTGTTAGACTCACTAACCGGCAGCATAGGAATATCAAGCATCTCCTCAAGGGCGAAACCTGTAGCTGCACGAGTTGCATCCTCAACCCCTTCCGGCATTGCGGCAACAGGAACTGTTACATCGGATGCTCACAAGACTGGTTCTAGGCCTTTAGATAAAGATGCTTTCCGAACTTTCATAAGTAGTTCAATGCCATTTGGTTGGTACTTCTTACTTAATGGAAGATTGTCATGGGTGGGAGGGCCCTCACCAAAAGTGTTGAGGCAACTTTCCCTGGGAAAGTTCAGTTTGCACCATGGAAACCTCAAAAATCACCTATCTAGTTCAGCCTTTGGAAGCATAGCTGATGAAGATAGCAATATTGAGACAGATGGTAACAACAATAATATGGTAAATGTAGATGAGTTCCTAACGGAAAAAATGAGCAACGATCTTCATCCAGCTGATTTGGAGGAGGCATTTTCCTGGCATGCATACAATTACGCCAAGGTACCTGCTTCCTCATTGTTTTTTATTTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Adap_comp_sub

Protein Analysis

237

Amino Acids

24.97

Weight (kDa)

5.95

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 688
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 676
AciI CCGC 2 cut(s) 63, 287
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 392, 678
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 3 cut(s) 31, 41, 375
AjnI CCWGG 4 cut(s) 20, 88, 459, 650
AluBI AGCT 3 cut(s) 251, 530, 629
AluI AGCT 3 cut(s) 251, 530, 629
Alw26I GTCTC 1 cut(s) 545
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 2 cut(s) 332, 428
ApaI GGGCCC 1 cut(s) 432
ApeKI GCWGC 2 cut(s) 207, 251
Asp718I GGTACC 1 cut(s) 676
AspS9I GGNCC 2 cut(s) 428, 429
AsuHPI GGTGA 4 cut(s) 131, 146, 426, 491
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 2 cut(s) 21, 432
BarI GAAGNNNNNNTAC 4 cut(s) 33, 37, 65, 69
BauI CACGAG 1 cut(s) 255
BbvI GCAGC 2 cut(s) 219, 238
BccI CCATC 2 cut(s) 181, 551
BciT130I CCWGG 4 cut(s) 22, 90, 461, 652
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 2 cut(s) 330, 507
BfmI CTRYAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 3 cut(s) 208, 252, 288
BlsI GCNGC 3 cut(s) 209, 253, 289
Bme1390I CCNGG 4 cut(s) 22, 90, 461, 652
BmgT120I GGNCC 2 cut(s) 428, 429
BmiI GGNNCC 4 cut(s) 18, 147, 430, 678
BmrFI CCNGG 4 cut(s) 22, 90, 461, 652
BmsI GCATC 6 cut(s) 13, 176, 234, 272, 301, 337
BpuEI CTTGAG 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 6 cut(s) 20, 88, 459, 460, 481, 672
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 136, 328
Bse3DI GCAATG 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 4 cut(s) 22, 90, 461, 652
BseDI CCNNGG 6 cut(s) 20, 88, 459, 460, 481, 672
BseGI GGATG 5 cut(s) 4, 167, 263, 316, 622
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 136, 328
BseRI GAGGAG 2 cut(s) 220, 653
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 2 cut(s) 219, 238
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 2 cut(s) 334, 430
BshNI GGYRCC 1 cut(s) 676
BsiSI CCGG 2 cut(s) 204, 279
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 545
BsnI GGCC 2 cut(s) 334, 430
Bsp120I GGGCCC 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 21, 432
Bsp143I GATC 1 cut(s) 616
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 2 cut(s) 63, 287
BspANI GGCC 2 cut(s) 334, 430
BspLI GGNNCC 4 cut(s) 18, 147, 430, 678
BspMI ACCTGC 1 cut(s) 688
BspT107I GGYRCC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 136, 328
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 6 cut(s) 20, 88, 459, 460, 481, 672
BssMI GATC 1 cut(s) 616
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 2 cut(s) 481, 672
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 4 cut(s) 22, 90, 461, 652
Bst4CI ACNGT 1 cut(s) 301
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 657
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 5 cut(s) 4, 167, 263, 316, 622
BstKTI GATC 1 cut(s) 619
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 1 cut(s) 616
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 4 cut(s) 22, 90, 461, 652
BstNSI RCATGY 2 cut(s) 113, 659
BstSCI CCNGG 4 cut(s) 20, 88, 459, 650
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 219, 238
BstXI CCANNNNNNTGG 1 cut(s) 387
BsuRI GGCC 2 cut(s) 334, 430
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 5 cut(s) 4, 167, 263, 316, 622
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 657
CaiI CAGNNNCTG 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 428, 429
Csp6I GTAC 2 cut(s) 391, 677
CviAII CATG 4 cut(s) 110, 417, 482, 656
CviJI RGCY 7 cut(s) 19, 251, 334, 430, 515, 530, 629
CviKI_1 RGCY 7 cut(s) 19, 251, 334, 430, 515, 530, 629
CviQI GTAC 2 cut(s) 391, 677
DpnI GATC 1 cut(s) 618
DpnII GATC 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 481, 672
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 21, 432
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 2 cut(s) 428, 429
EcoRII CCWGG 4 cut(s) 20, 88, 459, 650
EcoT14I CCWWGG 2 cut(s) 481, 672
EcoT22I ATGCAT 2 cut(s) 6, 661
EcoT38I GRGCYC 2 cut(s) 21, 432
ErhI CCWWGG 2 cut(s) 481, 672
FaeI CATG 4 cut(s) 113, 420, 485, 659
FatI CATG 4 cut(s) 109, 416, 481, 655
Fnu4HI GCNGC 3 cut(s) 208, 252, 288
FokI GGATG 4 cut(s) 154, 250, 323, 609
FriOI GRGCYC 2 cut(s) 21, 432
Fsp4HI GCNGC 3 cut(s) 208, 252, 288
FspBI CTAG 2 cut(s) 330, 507
GluI GCNGC 3 cut(s) 208, 252, 288
HaeIII GGCC 2 cut(s) 334, 430
HapII CCGG 2 cut(s) 204, 279
Hin1II CATG 4 cut(s) 113, 420, 485, 659
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 204, 279
HphI GGTGA 4 cut(s) 131, 146, 426, 491
Hpy188I TCNGA 3 cut(s) 182, 310, 356
HpyAV CCTTC 4 cut(s) 25, 35, 63, 285
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 6 cut(s) 4, 167, 254, 263, 478, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
Hsp92II CATG 4 cut(s) 113, 420, 485, 659
KpnI GGTACC 1 cut(s) 680
Kzo9I GATC 1 cut(s) 616
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 219, 238
LweI GCATC 6 cut(s) 13, 176, 234, 272, 301, 337
MaeI CTAG 2 cut(s) 330, 507
MaeIII GTNAC 4 cut(s) 48, 119, 301, 560
MalI GATC 1 cut(s) 618
MboI GATC 1 cut(s) 616
MboII GAAGA 4 cut(s) 420, 548, 611, 696
MhlI GDGCHC 2 cut(s) 21, 432
MluCI AATT 1 cut(s) 664
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 160
Mph1103I ATGCAT 2 cut(s) 6, 661
MseI TTAA 2 cut(s) 402, 709
MslI CAYNNNNRTG 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 2 cut(s) 204, 279
MspR9I CCNGG 4 cut(s) 22, 90, 461, 652
MvaI CCWGG 4 cut(s) 22, 90, 461, 652
MwoI GCNNNNNNNGC 1 cut(s) 260
NcoI CCATGG 1 cut(s) 481
NdeII GATC 1 cut(s) 616
NlaIII CATG 4 cut(s) 113, 420, 485, 659
NlaIV GGNNCC 4 cut(s) 18, 147, 430, 678
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 2 cut(s) 6, 661
NspI RCATGY 2 cut(s) 113, 659
PaeI GCATGC 1 cut(s) 659
PasI CCCWGGG 1 cut(s) 460
PceI AGGCCT 1 cut(s) 334
PkrI GCNGC 3 cut(s) 209, 253, 289
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp6I CCWGG 4 cut(s) 20, 88, 459, 650
PspGI CCWGG 4 cut(s) 20, 88, 459, 650
PspN4I GGNNCC 4 cut(s) 18, 147, 430, 678
PspOMI GGGCCC 1 cut(s) 428
PspPI GGNCC 2 cut(s) 428, 429
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 392, 678
RsaNI GTAC 2 cut(s) 391, 677
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 402, 709
SatI GCNGC 3 cut(s) 208, 252, 288
Sau3AI GATC 1 cut(s) 616
Sau96I GGNCC 2 cut(s) 428, 429
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 4 cut(s) 22, 90, 461, 652
SduI GDGCHC 2 cut(s) 21, 432
SfaNI GCATC 6 cut(s) 13, 176, 234, 272, 301, 337
SfcI CTRYAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SphI GCATGC 1 cut(s) 659
Sse9I AATT 1 cut(s) 664
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 2 cut(s) 63, 287
SspI AATATT 1 cut(s) 547
SspMI CTAG 2 cut(s) 330, 507
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 4 cut(s) 20, 88, 459, 650
StyI CCWWGG 2 cut(s) 481, 672
TaaI ACNGT 1 cut(s) 301
TasI AATT 1 cut(s) 664
TauI GCSGC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 402, 709
Tru9I TTAA 2 cut(s) 402, 709
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 207, 251
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 88, 352, 549, 611
TspGWI ACGGA 1 cut(s) 614
XceI RCATGY 2 cut(s) 113, 659
XspI CTAG 2 cut(s) 330, 507
Zsp2I ATGCAT 2 cut(s) 6, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.