pycom13g15660

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
11415127 .. 11415523
397 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGTGTCATCCTGCATTTGTCACTGTGGATGATTTCAAGGCGGTTAAGGTTCCCACTCAAATACTTGGCGCTGAGATTGATCGATTGTCTCCACCTGAAGTCGTGAAACAATTTGAGGAGGCTTTAGCTGCAAAACCTGAGGTGGGAAATATCTTGATCCAAACACTTTTCAATGATTTCAATGTAGTTGTTGATTTTAATCATGGACATCCTTTTAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.19

Weight (kDa)

4.84

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 3 cut(s) 37, 172, 181
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 82
BsaBI GATNNNNATC 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 82
BseGI GGATG 3 cut(s) 7, 34, 208
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 63, 129
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 115
BshVI ATCGAT 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 79, 156
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 64, 130
BspDI ATCGAT 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 151
BssMI GATC 2 cut(s) 79, 156
Bst4CI ACNGT 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 72, 138
BstF5I GGATG 3 cut(s) 7, 34, 208
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 82, 159
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 79, 156
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 82
BtsCI GGATG 3 cut(s) 7, 34, 208
BtsIMutI CAGTG 1 cut(s) 21
CfoI GCGC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 82
CviAII CATG 1 cut(s) 203
CviJI RGCY 3 cut(s) 122, 128, 219
CviKI_1 RGCY 3 cut(s) 122, 128, 219
DdeI CTNAG 2 cut(s) 72, 138
DpnI GATC 2 cut(s) 81, 158
DpnII GATC 2 cut(s) 79, 156
Eco57I CTGAAG 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 138
FaeI CATG 1 cut(s) 206
FaiI YATR 1 cut(s) 204
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 2 cut(s) 41, 195
Fsp4HI GCNGC 1 cut(s) 129
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 72
HhaI GCGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 103, 154
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 14, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 72, 138
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 79, 156
LpnPI CCDG 3 cut(s) 24, 108, 150
Lsp1109I GCAGC 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 81, 158
MboI GATC 2 cut(s) 79, 156
MluCI AATT 1 cut(s) 110
MnlI CCTC 3 cut(s) 109, 112, 133
MseI TTAA 2 cut(s) 45, 198
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 2 cut(s) 79, 156
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 45, 198
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 79, 156
SetI ASST 5 cut(s) 51, 97, 130, 139, 144
SgeI CNNG 8 cut(s) 23, 49, 77, 107, 115, 149, 166, 215
Sse9I AATT 1 cut(s) 110
SsiI CCGC 1 cut(s) 41
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 110
Tru1I TTAA 2 cut(s) 45, 198
Tru9I TTAA 2 cut(s) 45, 198
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 19
TspRI CASTG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.