Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11834433 .. 11835155

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACAATGATTCACAAGGTTCTGCTCCTTGTTCTCCCACTATTCAGGGTTCCATTGAGGATGCTGGGCCCGGTGGCAATGATTCACAAGGTTCTGCTCCTTGTTCTCCCACTATTCAGGGTTCTTTTAATTGCTAGTTGGTGTGAACAGAATAGAATTTGTGTTCCTGATGGTCCCCCAGAGTCTCTTGACCTCAACTATTGGAGGCTTGCATTTGAGTCGGAGTCCACTGATTCAAAATCTATGGGTAGTGTTGGCTCTTGCAAGGTGAAGGGTGTCAAGGTGGTTCCTTTAGAGGAGAGCCATACTATAAAGGGGGACGTTGGAAATGAAACAGAAGATGTGTCTCCATTAGAGGAAGAGTCTGAGCTTGATGTTTTCGAAAGTTATCAGGATCTTTTAACCACCTTGAATGAAGAGGAAGACTTCAGGAAGAGGTGCGAGGTAGTGGAGCAAATAAGGCTCTTGCTGAAGGAGGATGAGGAGGCCAGGATGTATATGGGTGCTAATGGATTTGTTGAAGCACTTCTACATTTTCTGAGCTCAGCTTTGCGTGAAGCGGGTTGTTTGGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTGCTGTCAACAATAACAGGTATAGTTGTTTAATAATTTTAAAAGAATCGAATGCAATAACTAGTTTATTTGACAATAATTTGATTCATTTTGTACTGAAAACTTCAGAGGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

241

Amino Acids

27.05

Weight (kDa)

4.82

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	3 cut(s)	412, 491, 693
AfaI	GTAC	1 cut(s)	699
AgsI	TTSAA	4 cut(s)	237, 412, 521, 601
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	3 cut(s)	370, 543, 548
AluI	AGCT	3 cut(s)	370, 543, 548
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	189, 351
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	2 cut(s)	67, 486
ApaI	GGGCCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	3 cut(s)	67, 68, 173
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	71, 545
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	545
BccI	CCATC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BciT130I	CCWGG	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	189, 351
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	2 cut(s)	135, 666
BlpI	GCTNAGC	1 cut(s)	544
Bme1390I	CCNGG	2 cut(s)	71, 490
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	67, 68, 173
BmiI	GGNNCC	5 cut(s)	51, 69, 175, 288, 586
BmrFI	CCNGG	2 cut(s)	71, 490
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	544
Bpu14I	TTCGAA	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	588
BseGI	GGATG	3 cut(s)	66, 484, 498
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	4 cut(s)	357, 530, 558, 587
BseRI	GAGGAG	2 cut(s)	311, 497
BseSI	GKGCMC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	69, 488
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	159, 332
BsmAI	GTCTC	2 cut(s)	189, 351
BsmFI	GGGAC	2 cut(s)	159, 332
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	2 cut(s)	69, 488
Bsp119I	TTCGAA	1 cut(s)	381
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	71, 545
Bsp143I	GATC	1 cut(s)	394
Bsp1720I	GCTNAGC	1 cut(s)	544
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	2 cut(s)	69, 488
BspCNI	CTCAG	4 cut(s)	358, 531, 557, 586
BspLI	GGNNCC	5 cut(s)	51, 69, 175, 288, 586
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	490
Bst6I	CTCTTC	4 cut(s)	354, 411, 428, 602
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	4 cut(s)	366, 539, 544, 573
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	3 cut(s)	66, 484, 498
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	2 cut(s)	189, 351
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	69, 488
BstSLI	GKGCMC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	69, 488
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	66, 484, 498
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	67, 68, 173
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	1 cut(s)	589
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	4 cut(s)	366, 539, 544, 573
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
DraI	TTTAAA	1 cut(s)	645
Eam1104I	CTCTTC	4 cut(s)	354, 411, 428, 602
EarI	CTCTTC	4 cut(s)	354, 411, 428, 602
Ecl136II	GAGCTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	2 cut(s)	71, 545
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	543
Eco57I	CTGAAG	3 cut(s)	412, 491, 693
EcoICRI	GAGCTC	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	588
EcoT38I	GRGCYC	2 cut(s)	71, 545
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	1 cut(s)	592
FaiI	YATR	7 cut(s)	245, 306, 311, 498, 500, 590, 627
FaqI	GGGAC	2 cut(s)	159, 332
FatI	CATG	1 cut(s)	588
FauI	CCCGC	1 cut(s)	553
FokI	GGATG	3 cut(s)	73, 491, 505
FriOI	GRGCYC	2 cut(s)	71, 545
FspBI	CTAG	2 cut(s)	135, 666
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	69, 488
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	1 cut(s)	592
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	9 cut(s)	10, 82, 182, 218, 224, 233, 362, 650, 688
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	3 cut(s)	146, 228, 613
Hpy188I	TCNGA	4 cut(s)	223, 367, 540, 712
Hpy188III	TCNNGA	5 cut(s)	167, 188, 392, 430, 575
Hpy8I	GTNNAC	3 cut(s)	146, 228, 613
HpyAV	CCTTC	2 cut(s)	265, 466
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	212, 264, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	4 cut(s)	366, 539, 544, 573
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	592
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	4 cut(s)	30, 102, 451, 584
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	135, 666
MaeII	ACGT	1 cut(s)	321
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	6 cut(s)	350, 371, 428, 434, 445, 589
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	71, 545
MluCI	AATT	4 cut(s)	129, 156, 639, 682
MlyI	GAGTC	4 cut(s)	191, 227, 233, 371
MmeI	TCCRAC	2 cut(s)	201, 304
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	5 cut(s)	128, 401, 635, 644, 721
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	71, 490
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	460
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	5 cut(s)	51, 69, 175, 288, 586
NspV	TTCGAA	1 cut(s)	381
PctI	GAATGC	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	5 cut(s)	10, 82, 233, 650, 688
PleI	GAGTC	4 cut(s)	190, 226, 232, 370
PpsI	GAGTC	4 cut(s)	190, 226, 232, 370
Psp124BI	GAGCTC	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	5 cut(s)	51, 69, 175, 288, 586
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	67, 68, 173
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	545
SaqAI	TTAA	5 cut(s)	128, 401, 635, 644, 721
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	3 cut(s)	67, 68, 173
SchI	GAGTC	4 cut(s)	191, 227, 233, 371
ScrFI	CCNGG	2 cut(s)	71, 490
SduI	GDGCHC	2 cut(s)	71, 545
SfaNI	GCATC	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	4 cut(s)	129, 156, 639, 682
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	2 cut(s)	135, 666
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	2 cut(s)	69, 488
StyI	CCWWGG	1 cut(s)	588
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	381, 653
TasI	AATT	4 cut(s)	129, 156, 639, 682
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	5 cut(s)	10, 82, 233, 650, 688
Tru1I	TTAA	5 cut(s)	128, 401, 635, 644, 721
Tru9I	TTAA	5 cut(s)	128, 401, 635, 644, 721
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	345, 429, 680
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	135, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.