pycom13g16320

Long chain acyl-CoA synthetase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
12033839 .. 12034240
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGATTCTATTGGCAGGGAAGCTCAGTTGAGAGGTTTCGAATTTGTAAAAGCCGTGACACTGGTGCTTGAACAATTCACAATGGAGAATGGACTGCTCACTCCGACGTTTAAGATCAAGAGATCTCAAGCGAAGGATTACTATGCAAACGCAATATCGACCATGTATTCGGAGCTCGCTGTTTCCGAATCCGCCCCTTCGAAGCTTTAA

Protein Analysis

70

Amino Acids

7.72

Weight (kDa)

6.17

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 41
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 3 cut(s) 23, 175, 205
AluI AGCT 3 cut(s) 23, 175, 205
Alw21I GWGCWC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
AsuII TTCGAA 2 cut(s) 39, 200
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 122
Bpu14I TTCGAA 2 cut(s) 39, 200
BpuEI CTTGAG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 177
Bsp119I TTCGAA 2 cut(s) 39, 200
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 114, 122
BspACI CCGC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 37
BspT104I TTCGAA 2 cut(s) 39, 200
BsrI ACTGG 1 cut(s) 66
BssMI GATC 2 cut(s) 114, 122
BstBI TTCGAA 2 cut(s) 39, 200
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 24
BstKTI GATC 2 cut(s) 117, 125
BstMBI GATC 2 cut(s) 114, 122
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 177
CviAII CATG 1 cut(s) 163
CviJI RGCY 4 cut(s) 23, 53, 175, 205
CviKI_1 RGCY 4 cut(s) 23, 53, 175, 205
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 116, 124
DpnII GATC 2 cut(s) 114, 122
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 144, 164
FatI CATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 177
Hin1II CATG 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 5, 188
Hpy188I TCNGA 3 cut(s) 105, 172, 187
Hpy188III TCNNGA 1 cut(s) 118
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 127, 207
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 114, 122
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 1 cut(s) 47
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 116, 124
MboI GATC 2 cut(s) 114, 122
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 41, 74
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 1 cut(s) 26
MseI TTAA 2 cut(s) 111, 208
NdeII GATC 2 cut(s) 114, 122
NlaIII CATG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 55
NspV TTCGAA 2 cut(s) 39, 200
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 2 cut(s) 5, 188
Psp124BI GAGCTC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 122
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 111, 208
Sau3AI GATC 2 cut(s) 114, 122
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 25, 37, 110, 177, 207
SfuI TTCGAA 2 cut(s) 39, 200
SgeI CNNG 8 cut(s) 28, 67, 74, 80, 130, 140, 175, 188
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 41, 74
SsiI CCGC 1 cut(s) 192
SstI GAGCTC 1 cut(s) 177
TaiI ACGT 1 cut(s) 110
TaqI TCGA 3 cut(s) 39, 158, 200
TasI AATT 2 cut(s) 41, 74
TfiI GAWTC 2 cut(s) 5, 188
Tru1I TTAA 2 cut(s) 111, 208
Tru9I TTAA 2 cut(s) 111, 208
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspRI CASTG 1 cut(s) 66
XapI RAATTY 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.