pycom13g16760

Altered inheritance of mitochondria protein 32-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
12529298 .. 12529588
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGCATAATAAACCTTTTCAAAAGGAGTGGATTATTAGTCTGGTTTCCTTCCCTTTCTCTCGCACTTCGTTCTCCACGACACCTCATCTCGCCATCATCGTTCTTGCCGGCACCATCAACGCCTACAGCTGCCACATCTTCCTCTGCTACAAGAGCCCCAAGGCCTGGCCATCGCGCGTCGAAGGCTCTAAGTCCGATCCGCTCGCTAAGTTCGCATGCGCTCTCAAAGCTCGCAAGAACGATGATGTTGTATTTGACTCCGTTACTCACTTTGTTTCTTTGGAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Suc_Fer-like

Protein Analysis

97

Amino Acids

10.82

Weight (kDa)

9.15

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 202
AccII CGCG 2 cut(s) 175, 177
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 129, 230
AluI AGCT 2 cut(s) 129, 230
AlwI GGATC 1 cut(s) 191
AoxI GGCC 2 cut(s) 162, 167
ApeKI GCWGC 1 cut(s) 129
AspLEI GCGC 2 cut(s) 177, 221
BalI TGGCCA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 116
BccI CCATC 3 cut(s) 101, 122, 178
BciT130I CCWGG 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 107
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 175, 177
BshFI GGCC 2 cut(s) 164, 169
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 165
BsnI GGCC 2 cut(s) 164, 169
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 164, 169
BspFNI CGCG 2 cut(s) 175, 177
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 166
BstC8I GCNNGC 4 cut(s) 109, 204, 217, 232
BstDEI CTNAG 2 cut(s) 189, 207
BstFNI CGCG 2 cut(s) 175, 177
BstHHI GCGC 2 cut(s) 177, 221
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 4 cut(s) 153, 183, 212, 227
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 124
BstUI CGCG 2 cut(s) 175, 177
BstV1I GCAGC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 164, 169
BtgZI GCGATG 1 cut(s) 156
Cac8I GCNNGC 4 cut(s) 109, 204, 217, 232
CfoI GCGC 2 cut(s) 177, 221
Cfr10I RCCGGY 1 cut(s) 107
CseI GACGC 1 cut(s) 166
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 1 cut(s) 216
CviJI RGCY 6 cut(s) 129, 156, 164, 169, 186, 230
CviKI_1 RGCY 6 cut(s) 129, 156, 164, 169, 186, 230
DdeI CTNAG 2 cut(s) 189, 207
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 219
FaiI YATR 2 cut(s) 6, 217
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 130
GlaI GCGC 2 cut(s) 176, 220
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 2 cut(s) 164, 169
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 166
HhaI GCGC 2 cut(s) 177, 221
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 2 cut(s) 175, 219
HinP1I GCGC 2 cut(s) 175, 219
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 196, 290
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 58, 176
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 183, 212, 227
HpyF3I CTNAG 2 cut(s) 189, 207
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 2 cut(s) 175, 219
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 26, 121, 151, 178
Lsp1109I GCAGC 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 202
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 169
MluNI TGGCCA 1 cut(s) 169
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 2 cut(s) 93, 152
Mox20I TGGCCA 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 169
Msp20I TGGCCA 1 cut(s) 169
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 2 cut(s) 175, 177
MwoI GCNNNNNNNGC 4 cut(s) 153, 183, 212, 227
NaeI GCCGGC 1 cut(s) 109
NdeII GATC 1 cut(s) 196
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 219
PaeI GCATGC 1 cut(s) 219
PceI AGGCCT 1 cut(s) 164
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 96
PdiI GCCGGC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 129
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 158
SetI ASST 4 cut(s) 16, 85, 131, 232
SfcI CTRYAG 1 cut(s) 124
SphI GCATGC 1 cut(s) 219
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 1 cut(s) 200
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 159
TaqI TCGA 1 cut(s) 180
TseI GCWGC 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 165
XceI RCATGY 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.