Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12735109 .. 12735381

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTATCAAGACTACATGAAGCAGATCCCGATCCCATCAAACCGTGGCTCTGTTATTCCATTTACCTCATGGGCGGGTTTAGGCAAGTACATTAAGCAGTTGTATGGACAACCTTTGCATTACCTCACCAATCTTCTCCTCAGACAGTGGGACCAGTTGAGGATTGGCAGTGAGGATGAATACAGGCCCTTGGATACCATCATTCATCCGCGTAAGCCACCATCTGGCTCGTTGAAGAAGTCCACCGGCACACCTCATCTCATCATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031050 GO:0031323 GO:0032259 GO:0032991 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0043621 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdDM_RDM1

Protein Analysis

91

Amino Acids

10.41

Weight (kDa)

9.7

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RdDM_RDM1	PF09187	1 - 72	3.6e-37	RNA-directed DNA methylation 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	74, 209
AclWI	GGATC	2 cut(s)	19, 25
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	235
AlwI	GGATC	2 cut(s)	19, 25
AoxI	GGCC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	151, 186
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	151
BccI	CCATC	3 cut(s)	43, 206, 229
BciVI	GTATCC	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 186
BmiI	GGNNCC	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	43, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	43, 189
BseGI	GGATG	2 cut(s)	181, 205
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	24, 30
BspACI	CCGC	2 cut(s)	74, 209
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	19, 25
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	43, 189
BssMI	GATC	2 cut(s)	24, 30
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	44, 147
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	181, 205
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	27, 33
BstMBI	GATC	2 cut(s)	24, 30
BstUI	CGCG	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	181, 205
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	152, 175
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	151, 186
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	16, 69, 268
CviJI	RGCY	4 cut(s)	48, 187, 217, 228
CviKI_1	RGCY	4 cut(s)	48, 187, 217, 228
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	26, 32
DpnII	GATC	2 cut(s)	24, 30
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	19, 72, 271
FaiI	YATR	4 cut(s)	17, 70, 105, 269
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	15, 68, 267
FauI	CCCGC	1 cut(s)	67
FokI	GGATG	2 cut(s)	188, 192
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	19, 72, 271
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	8, 28
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	44, 147
HpyCH4V	TGCA	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	19, 72, 271
Kzo9I	GATC	2 cut(s)	24, 30
LpnPI	CCDG	4 cut(s)	167, 169, 210, 259
MalI	GATC	2 cut(s)	26, 32
MboI	GATC	2 cut(s)	24, 30
MboII	GAAGA	2 cut(s)	125, 247
MflI	RGATCY	1 cut(s)	24
MnlI	CCTC	6 cut(s)	76, 134, 149, 153, 166, 264
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	211
NdeII	GATC	2 cut(s)	24, 30
NlaIII	CATG	3 cut(s)	19, 72, 271
NlaIV	GGNNCC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	2 cut(s)	151, 186
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	24, 30
Sau96I	GGNCC	2 cut(s)	151, 186
SetI	ASST	4 cut(s)	68, 115, 126, 256
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	266
SsiI	CCGC	2 cut(s)	74, 209
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	44, 147
TatI	WGTACW	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	2 cut(s)	152, 175
TspDTI	ATGAA	3 cut(s)	32, 192, 194
TspRI	CASTG	2 cut(s)	152, 175
Van91I	CCANNNNNTGG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	2 cut(s)	66, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.