Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029443

Physical Location & Seq

Genomic Coordinates Forward (+)

13309091 .. 13310060

Gene Structure 970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACCGATACCCGTCGTCGACTTCTTGAGATGGGATACAAGAACCCCATTCTCTTGCTTCATCCATTGGGAGGCTATACAAAGGCAGATGACGTCCCACTTAGTTGGCGAATGAAACAACATGAGAAGGTTCTTGAGGATGGTGTTCTTGATCCTGAGACGACTGTGGTTTCCATATTCCCCTCTCCCATGCACTATGCTGGCCCAACTGAGGTGCAGTGGCATGCAAAGGCTAGGATTAATGCAGGCGCTAACTTTTACATTGTTGGTCGGGACCCTGCAGGGATGGGTCATCCAACAGAGAACAGAGATCTGTATGATGCCGATCATGGCAAGAAAGTATTAAGTATGGCACCTGGACTTGAGAGACTTAACATCCTTCCCTTCAAGGTTGCTGCTTATGATAAAACTCAAGGTAAAATGGCATTTTTTGATCCCTCAAGGCCTCAAGACTTCCTTTTCATATCCGGCACAAAGATGCGAACACTTGCAAGGAACAAAGAGAACCCTCCCGAAGGATTCATGTGCCCTAATGGCTGGAGGGTGCTTGTCGACTACTATGATAGTTTGGTTCCTGCGGACAATGATAAAGTCCCAGAAGCAGTTCCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0001887 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009719 GO:0009725 GO:0009735 GO:0009970 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0070206 GO:0070566 GO:0071496 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

205

Amino Acids

22.94

Weight (kDa)

6.59

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-sulfurylase	PF01747	14 - 185	1.5e-50	ATP-sulfurylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029443)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g17490 pycom16g17010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	2 cut(s)	19, 552
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	2 cut(s)	146, 428
AcyI	GRCGYC	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	71, 211, 515
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	152, 361
AlwI	GGATC	2 cut(s)	146, 428
AoxI	GGCC	2 cut(s)	202, 443
ApeKI	GCWGC	1 cut(s)	395
AseI	ATTAAT	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	203, 274
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	25, 134, 280
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	152, 361
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	203, 274
BmiI	GGNNCC	4 cut(s)	275, 276, 354, 573
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	2 cut(s)	310, 468
BpmI	CTGGAG	1 cut(s)	559
BpuEI	CTTGAG	6 cut(s)	47, 155, 383, 396, 424, 432
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 211, 515
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	357
BseGI	GGATG	5 cut(s)	61, 145, 291, 292, 375
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	71, 211, 515
BseMII	CTCAG	2 cut(s)	147, 201
BseSI	GKGCMC	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	204, 445
BshNI	GGYRCC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	3 cut(s)	80, 287, 578
BslI	CCNNNNNNNGG	3 cut(s)	71, 211, 515
BsmAI	GTCTC	2 cut(s)	152, 361
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	3 cut(s)	80, 287, 578
BsnI	GGCC	2 cut(s)	204, 445
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	4 cut(s)	151, 310, 325, 433
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	2 cut(s)	204, 445
BspCNI	CTCAG	2 cut(s)	148, 202
BspLI	GGNNCC	4 cut(s)	275, 276, 354, 573
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	146, 428
BspT107I	GGYRCC	1 cut(s)	352
BssMI	GATC	4 cut(s)	151, 310, 325, 433
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	202, 225, 247
BstDEI	CTNAG	3 cut(s)	101, 156, 210
BstENI	CCTNNNNNAGG	1 cut(s)	513
BstF5I	GGATG	5 cut(s)	61, 145, 291, 292, 375
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	4 cut(s)	154, 313, 328, 436
BstMAI	GTCTC	2 cut(s)	152, 361
BstMBI	GATC	4 cut(s)	151, 310, 325, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 608
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	204, 445
BtsCI	GGATG	5 cut(s)	61, 145, 291, 292, 375
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	202, 225, 247
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	203, 274
CviAII	CATG	5 cut(s)	122, 190, 224, 329, 523
CviJI	RGCY	5 cut(s)	75, 204, 233, 445, 537
CviKI_1	RGCY	5 cut(s)	75, 204, 233, 445, 537
DdeI	CTNAG	3 cut(s)	101, 156, 210
DpnI	GATC	4 cut(s)	153, 312, 327, 435
DpnII	GATC	4 cut(s)	151, 310, 325, 433
Eco147I	AGGCCT	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	5 cut(s)	125, 193, 227, 332, 526
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	3 cut(s)	80, 287, 578
FatI	CATG	5 cut(s)	121, 189, 223, 328, 522
FblI	GTMKAC	2 cut(s)	19, 552
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	5 cut(s)	48, 152, 279, 298, 362
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	559
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	204, 445
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	125, 193, 227, 332, 526
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	2 cut(s)	20, 553
HindII	GTYRAC	2 cut(s)	20, 553
HinfI	GANTC	1 cut(s)	519
HpaII	CCGG	1 cut(s)	468
Hpy166II	GTNNAC	2 cut(s)	20, 553
Hpy188III	TCNNGA	7 cut(s)	26, 134, 149, 155, 272, 449, 512
Hpy8I	GTNNAC	2 cut(s)	20, 553
Hpy99I	CGWCG	2 cut(s)	18, 21
HpyAV	CCTTC	4 cut(s)	121, 389, 394, 509
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	193, 217, 227, 245, 281, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 608
HpyF3I	CTNAG	3 cut(s)	101, 156, 210
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	125, 193, 227, 332, 526
HspAI	GCGC	1 cut(s)	249
KflI	GGGWCCC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	151, 310, 325, 433
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	310, 468
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	93
MalI	GATC	4 cut(s)	153, 312, 327, 435
MboI	GATC	4 cut(s)	151, 310, 325, 433
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	8 cut(s)	65, 130, 193, 205, 448, 456, 519, 534
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	3 cut(s)	240, 344, 372
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	534, 608
NdeII	GATC	4 cut(s)	151, 310, 325, 433
NlaIII	CATG	5 cut(s)	125, 193, 227, 332, 526
NlaIV	GGNNCC	4 cut(s)	275, 276, 354, 573
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	274
PshBI	ATTAAT	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	275, 276, 354, 573
PspPI	GGNCC	2 cut(s)	203, 274
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	476
SalI	GTCGAC	2 cut(s)	18, 551
SaqAI	TTAA	3 cut(s)	240, 344, 372
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	4 cut(s)	151, 310, 325, 433
Sau96I	GGNCC	2 cut(s)	203, 274
SbfI	CCTGCAGG	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	357
SdaI	CCTGCAGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	6 cut(s)	96, 132, 216, 358, 393, 418
SfaNI	GCATC	2 cut(s)	310, 468
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	6 cut(s)	26, 134, 362, 411, 439, 447
SmoI	CTYRAG	6 cut(s)	26, 134, 362, 411, 439, 447
SphI	GCATGC	1 cut(s)	227
Sse8387I	CCTGCAGG	1 cut(s)	283
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	19, 552
TaqII	GACCGA	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	3 cut(s)	240, 344, 372
Tru9I	TTAA	3 cut(s)	240, 344, 372
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	4 cut(s)	50, 128, 451, 511
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	513
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	2 cut(s)	19, 552
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.