pycom13g17610

subtilisin inhibitor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
13446312 .. 13446648
337 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGCCACGTGGCAGATCATGTTCTAATGGAAAGAGTTCATGGCCGGAGCTAGTGGGGACTAGAGGAGAGGAGGCGGTAGCCATTATAATCAAAGAGAATCCATCGGTCAGAGCCCACACCATATATCTGTACACCATGAATCCACCATCGTTCTGCGCTCTCACCCAAGACCTCCGTTTTAACAGGGTTCTCGTCTTCATTGATCAACGATGTCTTGTCGCTCTACCACCCAAGATAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.93

Weight (kDa)

9.35

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 11 - 80 1.5e-17 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AciI CCGC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 41
AcvI CACGTG 1 cut(s) 8
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AoxI GGCC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 154
BanII GRGCYC 1 cut(s) 115
BbrPI CACGTG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 187
BccI CCATC 2 cut(s) 109, 154
BclI TGATCA 1 cut(s) 202
BfaI CTAG 2 cut(s) 50, 60
BpiI GAAGAC 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 78, 83
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 14, 202
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 129
BssMI GATC 2 cut(s) 14, 202
BstAUI TGTACA 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 8
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 17, 205
BstMBI GATC 2 cut(s) 14, 202
BstV2I GAAGAC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 43
CfoI GCGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 130
CviAII CATG 3 cut(s) 18, 39, 136
CviJI RGCY 4 cut(s) 43, 49, 80, 113
CviKI_1 RGCY 4 cut(s) 43, 49, 80, 113
CviQI GTAC 1 cut(s) 130
DpnI GATC 2 cut(s) 16, 204
DpnII GATC 2 cut(s) 14, 202
EaeI YGGCCR 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 115
Eco72I CACGTG 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 3 cut(s) 21, 42, 139
FaiI YATR 6 cut(s) 19, 40, 86, 122, 124, 137
FaqI GGGAC 1 cut(s) 70
FatI CATG 3 cut(s) 17, 38, 135
FbaI TGATCA 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 2 cut(s) 50, 60
GlaI GCGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 21, 42, 139
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 2 cut(s) 97, 139
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 7
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 3 cut(s) 21, 42, 139
HspAI GCGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 14, 202
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 2 cut(s) 57, 169
MaeI CTAG 2 cut(s) 50, 60
MaeII ACGT 1 cut(s) 7
MalI GATC 2 cut(s) 16, 204
MboI GATC 2 cut(s) 14, 202
MboII GAAGA 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 115
MnlI CCTC 4 cut(s) 56, 61, 64, 182
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 44
NdeII GATC 2 cut(s) 14, 202
NlaIII CATG 3 cut(s) 21, 42, 139
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 97, 139
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 8
PsiI TTATAA 1 cut(s) 86
PspCI CACGTG 1 cut(s) 8
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 2 cut(s) 14, 202
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 10, 51, 174
SsiI CCGC 1 cut(s) 74
SspMI CTAG 2 cut(s) 50, 60
TaiI ACGT 1 cut(s) 10
TaqII GACCGA 1 cut(s) 94
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 2 cut(s) 97, 139
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TspDTI ATGAA 3 cut(s) 27, 152, 187
TspGWI ACGGA 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 2 cut(s) 50, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.