Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14762063 .. 14762840

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGACAACAACATCATATACCAATATTGGAGTGAATTGTTTGATTTCACCTTTGTATTTGTTTCGAGAGAATTGTATTATGGTTTTGATGCAGCAACTTATGCTCGTATCACTGAGACGTACGAAGCTAGAAGGAAGTACCTGAAGGAGCTGCAGATAAAAAGTTGGAGGAGAAAAATAATAAATGAGGCCAAGGTTGACGAAAGCAAACAGATGGATTTTGCAAAGGTTGAGAAGTGTTACCTTGTATTTAGTTGTGTATCCACTTTGGTTAATTTCACCAAATGTAGGCTAGATGTGTGGCTGATCGATCATTTTTGTTTTGTAATGGTGGGAATCCTTATAGAGAGAGAGAAACATTCTCTCTGCGATTTTAGCAGAGTGCAGCATCCATTTTCTTCTCGTTTTTTCTGTAATAATTTCTTCTTCTCTGTTCAATTAACACACACTAAATCAAACTTCATCATGGCCTCAGAGCCAACGACGTTGAAGCAATGGAGCTGCATTCAAGCTCGTTCTGGTTCACATAAAATCGTCGAAACTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

183

Amino Acids

21.74

Weight (kDa)

8.64

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	2 cut(s)	122, 140
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	437, 490, 509
AluBI	AGCT	4 cut(s)	128, 151, 501, 512
AluI	AGCT	4 cut(s)	128, 151, 501, 512
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	189, 468
ApeKI	GCWGC	4 cut(s)	92, 151, 385, 501
AsuHPI	GGTGA	2 cut(s)	40, 271
BbvI	GCAGC	4 cut(s)	104, 138, 397, 488
BccI	CCATC	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	129, 293
BfmI	CTRYAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	4 cut(s)	93, 152, 386, 502
BlsI	GCNGC	4 cut(s)	94, 153, 387, 503
BmsI	GCATC	2 cut(s)	79, 397
Bsa29I	ATCGAT	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	500
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	105, 486
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	104, 138, 397, 488
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	191, 470
BshVI	ATCGAT	1 cut(s)	309
BsiWI	CGTACG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	2 cut(s)	191, 470
Bsp143I	GATC	2 cut(s)	306, 310
BspANI	GGCC	2 cut(s)	191, 470
BspCNI	CTCAG	2 cut(s)	106, 485
BspDI	ATCGAT	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	306, 310
BssT1I	CCWWGG	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	114, 472
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	309, 313
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	306, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 375
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	4 cut(s)	104, 138, 397, 488
Bsu15I	ATCGAT	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	191, 470
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	121, 139
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	9 cut(s)	128, 151, 191, 292, 304, 470, 478, 501, 512
CviKI_1	RGCY	9 cut(s)	128, 151, 191, 292, 304, 470, 478, 501, 512
CviQI	GTAC	2 cut(s)	121, 139
DdeI	CTNAG	2 cut(s)	114, 472
DpnI	GATC	2 cut(s)	308, 312
DpnII	GATC	2 cut(s)	306, 310
Eco130I	CCWWGG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	469
FaiI	YATR	8 cut(s)	17, 19, 81, 102, 344, 467, 528, 547
FatI	CATG	1 cut(s)	465
Fnu4HI	GCNGC	4 cut(s)	93, 152, 386, 502
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	93, 152, 386, 502
FspBI	CTAG	2 cut(s)	129, 293
GluI	GCNGC	4 cut(s)	93, 152, 386, 502
HaeIII	GGCC	2 cut(s)	191, 470
Hin1II	CATG	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	336
HphI	GGTGA	2 cut(s)	40, 271
Hpy166II	GTNNAC	2 cut(s)	199, 524
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	2 cut(s)	199, 524
Hpy99I	CGWCG	2 cut(s)	487, 539
HpyAV	CCTTC	2 cut(s)	126, 139
HpyCH4IV	ACGT	2 cut(s)	119, 485
HpyCH4V	TGCA	5 cut(s)	92, 154, 224, 385, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 375
HpyF3I	CTNAG	2 cut(s)	114, 472
HpySE526I	ACGT	2 cut(s)	119, 485
Hsp92II	CATG	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	306, 310
LmnI	GCTCC	2 cut(s)	148, 498
LpnPI	CCDG	2 cut(s)	155, 504
Lsp1109I	GCAGC	4 cut(s)	104, 138, 397, 488
LweI	GCATC	2 cut(s)	79, 397
MaeI	CTAG	2 cut(s)	129, 293
MaeII	ACGT	2 cut(s)	119, 485
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	308, 312
MboI	GATC	2 cut(s)	306, 310
MboII	GAAGA	3 cut(s)	390, 415, 418
MluCI	AATT	5 cut(s)	35, 71, 274, 418, 437
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	162, 181, 481
MseI	TTAA	2 cut(s)	273, 440
Mva1269I	GAATGC	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	101, 375
NdeII	GATC	2 cut(s)	306, 310
NlaIII	CATG	1 cut(s)	469
PctI	GAATGC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	336
Pfl23II	CGTACG	1 cut(s)	120
PkrI	GCNGC	4 cut(s)	94, 153, 387, 503
PspLI	CGTACG	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	122, 140
RsaNI	GTAC	2 cut(s)	121, 139
SaqAI	TTAA	2 cut(s)	273, 440
SatI	GCNGC	4 cut(s)	93, 152, 386, 502
Sau3AI	GATC	2 cut(s)	306, 310
SfaNI	GCATC	2 cut(s)	79, 397
SfcI	CTRYAG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	35, 71, 274, 418, 437
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	2 cut(s)	129, 293
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	122, 488
TaqI	TCGA	3 cut(s)	65, 309, 537
TasI	AATT	5 cut(s)	35, 71, 274, 418, 437
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	273, 440
Tru9I	TTAA	2 cut(s)	273, 440
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	4 cut(s)	92, 151, 385, 501
TspDTI	ATGAA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	118
XspI	CTAG	2 cut(s)	129, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.