Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14767611 .. 14768487

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGTGAAGATCCTCTCCTGATGCTGACGCGAATAAGAATCTGTGAATGTGACAAAAAATTGATTTGCCAACTTAGTTCAAGCAGCTCAATATTCATGCATGGGAGGCATTTGAAAAAGGGCAAGACATTCACATGTAGGTTGCTCTATCTCAAGCAGAATTATTGTATAATAACTATATGTATGGAGAAGTTTGTCAATGTTGTTACTGAAGAAGAACTTCCAAATGAGCTCCTTCTGGGACAGTCTGAGAAACAAGTTGAATATGATCATGCTGGTAGAGATGTAAAGGGCATGGATAGATACTTGGGAATCACTCAACTAGGAGCAACGGAGCTCGCTCACGTCGTTAATCGTGGATTCGCTCACACGACCAAGCCAAATACAATTTTAATTCATTCAAATCTCCCTTCAAGGTTTTCTAGTACAATATTTATAAGGGTTTACAAATTAATTAACCTTAGAATTAAAATACAAAACCTTTGTTATTCCAAACATGGTATAAATAATATTAAATTCTTTTTCAAATCAGTTCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

181

Amino Acids

20.86

Weight (kDa)

9.47

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AccII	CGCG	1 cut(s)	31
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	6 cut(s)	81, 115, 263, 402, 414, 526
AjiI	CACGTC	1 cut(s)	346
AluBI	AGCT	3 cut(s)	87, 232, 337
AluI	AGCT	3 cut(s)	87, 232, 337
Alw21I	GWGCWC	2 cut(s)	234, 339
AlwI	GGATC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	515
AseI	ATTAAT	1 cut(s)	452
Asp700I	GAANNNNTTC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	234, 339
Bbv12I	GWGCWC	2 cut(s)	234, 339
BbvI	GCAGC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	2 cut(s)	323, 423
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	346
BmsI	GCATC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	234, 339
BslFI	GGGAC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	234, 339
Bsp143I	GATC	2 cut(s)	10, 268
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	5
BssMI	GATC	2 cut(s)	10, 268
Bst4CI	ACNGT	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	3 cut(s)	74, 249, 461
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	13, 271
BstMBI	GATC	2 cut(s)	10, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	138
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtrI	CACGTC	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	339
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	6 cut(s)	97, 101, 135, 272, 295, 497
CviJI	RGCY	4 cut(s)	87, 232, 337, 379
CviKI_1	RGCY	4 cut(s)	87, 232, 337, 379
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	3 cut(s)	74, 249, 461
DpnI	GATC	2 cut(s)	12, 270
DpnII	GATC	2 cut(s)	10, 268
Ecl136II	GAGCTC	2 cut(s)	232, 337
Eco24I	GRGCYC	2 cut(s)	234, 339
Eco53kI	GAGCTC	2 cut(s)	232, 337
Eco57I	CTGAAG	1 cut(s)	231
EcoICRI	GAGCTC	2 cut(s)	232, 337
EcoT22I	ATGCAT	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	234, 339
FaeI	CATG	6 cut(s)	100, 104, 138, 275, 298, 500
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	6 cut(s)	96, 100, 134, 271, 294, 496
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	85
FriOI	GRGCYC	2 cut(s)	234, 339
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	2 cut(s)	323, 423
GluI	GCNGC	1 cut(s)	85
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	6 cut(s)	100, 104, 138, 275, 298, 500
HinfI	GANTC	3 cut(s)	39, 312, 360
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	245, 420
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	74, 249, 461
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	6 cut(s)	100, 104, 138, 275, 298, 500
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	10, 268
LmnI	GCTCC	3 cut(s)	237, 326, 334
LpnPI	CCDG	3 cut(s)	32, 224, 261
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	2 cut(s)	323, 423
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	50, 205
MalI	GATC	2 cut(s)	12, 270
MboI	GATC	2 cut(s)	10, 268
MboII	GAAGA	3 cut(s)	20, 224, 227
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	234, 339
MluCI	AATT	8 cut(s)	59, 160, 387, 393, 449, 453, 465, 515
MnlI	CCTC	2 cut(s)	24, 99
Mph1103I	ATGCAT	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	6 cut(s)	351, 392, 452, 456, 468, 513
MslI	CAYNNNNRTG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	2 cut(s)	10, 268
NlaIII	CATG	6 cut(s)	100, 104, 138, 275, 298, 500
NmuCI	GTSAC	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	102
NspI	RCATGY	1 cut(s)	138
PacI	TTAATTAA	1 cut(s)	456
PciI	ACATGT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	39, 312, 360
PkrI	GCNGC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	437
Psp124BI	GAGCTC	2 cut(s)	234, 339
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	133
SacI	GAGCTC	2 cut(s)	234, 339
SaqAI	TTAA	6 cut(s)	351, 392, 452, 456, 468, 513
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	10, 268
SduI	GDGCHC	2 cut(s)	234, 339
SetI	ASST	8 cut(s)	89, 143, 234, 339, 348, 419, 462, 483
SfaNI	GCATC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	8 cut(s)	59, 160, 387, 393, 449, 453, 465, 515
SspI	AATATT	3 cut(s)	93, 432, 511
SspMI	CTAG	2 cut(s)	323, 423
SstI	GAGCTC	2 cut(s)	234, 339
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	348
TasI	AATT	8 cut(s)	59, 160, 387, 393, 449, 453, 465, 515
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	39, 312, 360
Tru1I	TTAA	6 cut(s)	351, 392, 452, 456, 468, 513
Tru9I	TTAA	6 cut(s)	351, 392, 452, 456, 468, 513
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	85, 386
TspGWI	ACGGA	1 cut(s)	347
VspI	ATTAAT	1 cut(s)	452
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	2 cut(s)	323, 423
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.