Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16002120 .. 16003457

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTACGGAAAGCCTCCATAAGTGGAAAGAAAATTGATGTCAGCAAGAGTACTACTAATAACAAAGATGTGTCTACTTCTACAGAAGATCTAGGTGAAGAAAATGAAGACGCTATTCCTGACACCTTAGGCCAGGAAAGGGTTGATGCCTTGAGTTTCCCAGTGCTGCCTGAAAATGGACAGCCAGATTTTGATATTTCCTCTGTGAATCTACCTCCTGATCAGATGCGAACAGTTGAAAACATCAGTACACTAATTTCTGAGTTAGCATTGGAGAAAGAAGAGTTGATAGAGTCTTTGGCATCCGAGTCATCTCAATGGTCCAAGCTGAAGGAATTGAACAATGAATTGTCCCGGAAACTTGAAGCTCAAACTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0051781 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.93

Weight (kDa)

4.35

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	2 cut(s)	52, 250
AfiI	CCNNNNNNNGG	2 cut(s)	139, 176
AgsI	TTSAA	3 cut(s)	239, 340, 365
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	2 cut(s)	328, 368
AluI	AGCT	2 cut(s)	328, 368
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	321
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	321
AxyI	CCTNAGG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	355
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	81
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	134, 355
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	134, 355
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	136, 216, 311
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 176
Bse1I	ACTGG	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	139, 176
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	139, 176
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	88, 220
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	88, 220
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	127, 261, 375
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	2 cut(s)	91, 223
BstMBI	GATC	2 cut(s)	88, 220
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 353
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	321
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	51, 249
CviJI	RGCY	5 cut(s)	14, 132, 184, 328, 368
CviKI_1	RGCY	5 cut(s)	14, 132, 184, 328, 368
CviQI	GTAC	2 cut(s)	51, 249
DdeI	CTNAG	3 cut(s)	127, 261, 375
DpnI	GATC	2 cut(s)	90, 222
DpnII	GATC	2 cut(s)	88, 220
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	350
Eco81I	CCTNAGG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	132
FaiI	YATR	1 cut(s)	20
FaqI	GGGAC	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	1 cut(s)	119
HinfI	GANTC	3 cut(s)	208, 293, 308
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	75, 251
Hpy188I	TCNGA	3 cut(s)	225, 262, 307
Hpy188III	TCNNGA	2 cut(s)	119, 218
Hpy8I	GTNNAC	2 cut(s)	75, 251
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	235
HpyF3I	CTNAG	3 cut(s)	127, 261, 375
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	88, 220
LpnPI	CCDG	8 cut(s)	119, 132, 146, 174, 183, 198, 231, 368
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	3 cut(s)	136, 216, 311
MaeI	CTAG	1 cut(s)	92
MalI	GATC	2 cut(s)	90, 222
MboI	GATC	2 cut(s)	88, 220
MboII	GAAGA	4 cut(s)	98, 110, 119, 293
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	4 cut(s)	33, 255, 335, 347
MlyI	GAGTC	2 cut(s)	302, 317
MnlI	CCTC	3 cut(s)	25, 211, 225
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	2 cut(s)	134, 355
MvaI	CCWGG	1 cut(s)	134
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	2 cut(s)	88, 220
PfeI	GAWTC	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	2 cut(s)	301, 316
PpsI	GAGTC	2 cut(s)	301, 316
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	52, 250
RsaNI	GTAC	2 cut(s)	51, 249
RseI	CAYNNNNRTG	1 cut(s)	316
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	88, 220
Sau96I	GGNCC	1 cut(s)	321
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	2 cut(s)	302, 317
ScrFI	CCNGG	2 cut(s)	134, 355
SetI	ASST	5 cut(s)	97, 128, 217, 330, 370
SfaNI	GCATC	3 cut(s)	136, 216, 311
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	4 cut(s)	33, 255, 335, 347
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	132, 353
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	4 cut(s)	33, 255, 335, 347
TatI	WGTACW	2 cut(s)	50, 248
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	120, 360
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.