pycom13g20740

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
16912013 .. 16912357
345 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGGGGGAGGAATGGAAGCAAACAAGAACAAGTTCATAGAGGAGTGGGGATCCGTGAGAGAAAATCTCGAGTACAACTTCCGCTGGACTCGCCGCAACTTCGCCCTCGTTGGCATCTTCGGCATCGCCCTCCCTATCTTGGTTTACAAGGGCATCGTCAGAGACTTCGTAACCCCCTCTCTCTCCTTCTCTCTCTCAGTTATTTTTGTTTATTTATTTATTTGTTTAATTTTGGAAATTAATCCCGTGGATCCGTTTGGATTTTGCCTAATCGATCGCAATAGGGTTCGAAATATGTTGGTTTTTGATTCCTCAGTAGCTCGGTTTAGACTGTTTTCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.21

Weight (kDa)

9.18

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 94
AclWI GGATC 4 cut(s) 45, 58, 245, 258
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 139
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 4 cut(s) 45, 58, 245, 258
Ama87I CYCGRG 1 cut(s) 68
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 68
BamHI GGATCC 2 cut(s) 50, 250
BcoDI GTCTC 1 cut(s) 156
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 52, 252
BmsI GCATC 3 cut(s) 123, 132, 162
BplI GAGNNNNNCTC 2 cut(s) 51, 83
Bpu14I TTCGAA 1 cut(s) 289
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 210, 327
BseRI GAGGAG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 277
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 289
Bsp143I GATC 3 cut(s) 50, 250, 274
BspACI CCGC 2 cut(s) 82, 94
BspCNI CTCAG 2 cut(s) 209, 326
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 52, 252
BspPI GGATC 4 cut(s) 45, 58, 245, 258
BspT104I TTCGAA 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 50, 250, 274
Bst4CI ACNGT 1 cut(s) 333
BstBI TTCGAA 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 196, 313
BstDSI CCRYGG 1 cut(s) 246
BstKTI GATC 3 cut(s) 53, 253, 277
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 3 cut(s) 50, 250, 274
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 90, 120
BstX2I RGATCY 2 cut(s) 50, 250
BstYI RGATCY 2 cut(s) 50, 250
Bsu15I ATCGAT 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 73
CviJI RGCY 1 cut(s) 320
CviKI_1 RGCY 1 cut(s) 320
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 2 cut(s) 196, 313
DpnI GATC 3 cut(s) 52, 252, 276
DpnII GATC 3 cut(s) 50, 250, 274
Eco88I CYCGRG 1 cut(s) 68
FaiI YATR 2 cut(s) 38, 296
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 88, 308
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 120
HpyF3I CTNAG 2 cut(s) 196, 313
Kzo9I GATC 3 cut(s) 50, 250, 274
LpnPI CCDG 1 cut(s) 70
LweI GCATC 3 cut(s) 123, 132, 162
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 52, 252, 276
MboI GATC 3 cut(s) 50, 250, 274
MboII GAAGA 1 cut(s) 109
MflI RGATCY 2 cut(s) 50, 250
MluCI AATT 2 cut(s) 228, 237
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 5 cut(s) 34, 116, 140, 187, 322
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 2 cut(s) 227, 240
MspA1I CMGCKG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 90, 120
NdeII GATC 3 cut(s) 50, 250, 274
NlaIV GGNNCC 2 cut(s) 52, 252
NspV TTCGAA 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 95
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 52, 252
PsuI RGATCY 2 cut(s) 50, 250
PvuI CGATCG 1 cut(s) 277
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 227, 240
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 3 cut(s) 50, 250, 274
SchI GAGTC 1 cut(s) 82
SetI ASST 1 cut(s) 322
SfaNI GCATC 3 cut(s) 123, 132, 162
Sfr274I CTCGAG 1 cut(s) 68
SfuI TTCGAA 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 228, 237
SsiI CCGC 2 cut(s) 82, 94
TaaI ACNGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 69, 273, 289
TasI AATT 2 cut(s) 228, 237
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 227, 240
Tru9I TTAA 2 cut(s) 227, 240
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 2 cut(s) 43, 243
VspI ATTAAT 1 cut(s) 240
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.