pycom13g21380

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
17995075 .. 17995350
276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGGCCATGCTCCTTGGCGTGCTTGGCGTGCTCGAGGTGGCGGCGCTCCTCGGGAAGAGCGACGAGGTAGGAGAAGATCATGCCTCCGAAGCAGACATGGAGGAGAGGATCGACGGAGCTGGTCTGGATGTACTTGGCGTGGTAGTTGTCCAAGCCTCTCTGCACAGCCTTCTTGGCATAATCGACGGACAGCATCGGCTTAATGTGGTCGGGCAATTCCTTCACCCTCAACCCCTTGATCTCGTTGTAGAATCTCCTCATCGCCATTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

92

Amino Acids

9.73

Weight (kDa)

4.64

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 132
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 2 cut(s) 32, 50
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 2 cut(s) 32, 50
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmeT110I CYCGRG 2 cut(s) 32, 50
BmsI GCATC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 13, 49
BseDI CCNNGG 2 cut(s) 13, 49
BseGI GGATG 1 cut(s) 133
BseRI GAGGAG 3 cut(s) 38, 116, 246
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 33
BsiHKCI CYCGRG 2 cut(s) 32, 50
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 32, 50
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 3 cut(s) 76, 108, 238
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 13, 49
BssMI GATC 3 cut(s) 76, 108, 238
BssT1I CCWWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 20, 29
BstF5I GGATG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 79, 111, 241
BstMBI GATC 3 cut(s) 76, 108, 238
BstMWI GCNNNNNNNGC 4 cut(s) 24, 28, 89, 174
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 20, 29
CfoI GCGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 131
CviAII CATG 3 cut(s) 7, 80, 97
CviJI RGCY 5 cut(s) 5, 119, 155, 168, 199
CviKI_1 RGCY 5 cut(s) 5, 119, 155, 168, 199
CviQI GTAC 1 cut(s) 131
DpnI GATC 3 cut(s) 78, 110, 240
DpnII GATC 3 cut(s) 76, 108, 238
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 13
Eco88I CYCGRG 2 cut(s) 32, 50
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 10, 83, 100
FaiI YATR 4 cut(s) 8, 81, 98, 179
FatI CATG 3 cut(s) 6, 79, 96
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 10, 83, 100
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 251
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 52, 125
Hpy99I CGWCG 3 cut(s) 65, 116, 188
HpyAV CCTTC 2 cut(s) 179, 230
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 28, 89, 174
Hsp92II CATG 3 cut(s) 10, 83, 100
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 76, 108, 238
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 3 cut(s) 15, 51, 116
LpnPI CCDG 2 cut(s) 105, 110
LweI GCATC 1 cut(s) 202
MalI GATC 3 cut(s) 78, 110, 240
MboI GATC 3 cut(s) 76, 108, 238
MboII GAAGA 2 cut(s) 67, 86
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 9 cut(s) 28, 58, 59, 94, 94, 99, 166, 237, 267
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 4 cut(s) 24, 28, 89, 174
NdeII GATC 3 cut(s) 76, 108, 238
NlaIII CATG 3 cut(s) 10, 83, 100
PaeR7I CTCGAG 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 43
PspXI VCTCGAGB 1 cut(s) 32
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 3 cut(s) 76, 108, 238
SduI GDGCHC 1 cut(s) 33
SetI ASST 3 cut(s) 39, 69, 121
SfaNI GCATC 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 13
TaqI TCGA 3 cut(s) 33, 111, 183
TasI AATT 1 cut(s) 215
TatI WGTACW 1 cut(s) 130
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TspGWI ACGGA 2 cut(s) 129, 201
XhoI CTCGAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.