pycom13g21720

Villin-4-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
18655403 .. 18657789
2387 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
ATGGTAGGGGCAAGGTTGCAGGTCTCACTCTTAAAGCGTCAAGGGGTTAATGTGAAGGGTCTGTTGAACACACAGATCGATCCTGTAAAAGAAGAACCTCAACCATATATTGATTGCACTGGAAACTTGCAGGTTTGGCGTGTGAATGGCCAGGAAAAGATTAACCTTCAATCTTCTGATCAATCAAAATTTTACAGTCGAGATTGCTATATTTTTCATTATGCATATCCAGGAGAGGATAAAGAGGAACACCTTATAGGAACATGGTTTGGAAAGCAGAGCGTTGAGGATGAAAGGGTATCAGCTATATCACTAGCAAGCAAGATGGTTGAGTCAATGAAGTTTCTTGCTGCCCAGGCTCGTATCTATGAAGGAAATGAACCAATTCAGTTCCATTCAATCTTCCAAAGCATAATTGTTTTGAAGGGTGGTCTCAGTGATGGATACAAAAATTATGTTGCGGAGAAAGAAGTTCCAGATGAGACATATCAAGAAGATGGTGTTGCATTATTTCGTGTCCAGGGATCTGGACCTGATAATATGCAAGCAATACAAGTTGATGCAGTAAGTTGCATCATCTTTGAATTCCTCCTACTGTTATATATTACATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

22.95

Weight (kDa)

4.93

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 10, 121
AciI CCGC 1 cut(s) 461
AclWI GGATC 2 cut(s) 74, 532
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 2 cut(s) 188, 584
AgsI TTSAA 5 cut(s) 67, 170, 399, 424, 584
AjnI CCWGG 4 cut(s) 150, 229, 354, 519
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 28, 437, 476
AlwI GGATC 2 cut(s) 74, 532
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 2 cut(s) 188, 584
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 530
AvaII GGWCC 1 cut(s) 530
BalI TGGCCA 1 cut(s) 150
BbvI GCAGC 1 cut(s) 337
BccI CCATC 3 cut(s) 319, 434, 491
BciT130I CCWGG 4 cut(s) 152, 231, 356, 521
BciVI GTATCC 1 cut(s) 437
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 3 cut(s) 28, 437, 476
BfaI CTAG 1 cut(s) 314
BfuAI ACCTGC 2 cut(s) 10, 121
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme1390I CCNGG 4 cut(s) 152, 231, 356, 521
Bme18I GGWCC 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 530
BmrFI CCNGG 4 cut(s) 152, 231, 356, 521
BmsI GCATC 2 cut(s) 550, 582
Bsa29I ATCGAT 1 cut(s) 78
BsaI GGTCTC 2 cut(s) 28, 437
BsaJI CCNNGG 2 cut(s) 354, 520
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 4 cut(s) 152, 231, 356, 521
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 354, 520
BseGI GGATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 448
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 150
BshVI ATCGAT 1 cut(s) 78
BsmAI GTCTC 3 cut(s) 28, 437, 476
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 2 cut(s) 28, 437
Bsp143I GATC 4 cut(s) 75, 79, 178, 524
BspACI CCGC 1 cut(s) 461
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 447
BspDI ATCGAT 1 cut(s) 78
BspMI ACCTGC 2 cut(s) 10, 121
BspPI GGATC 2 cut(s) 74, 532
BspTNI GGTCTC 2 cut(s) 28, 437
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 354, 520
BssMI GATC 4 cut(s) 75, 79, 178, 524
Bst2UI CCWGG 4 cut(s) 152, 231, 356, 521
Bst4CI ACNGT 2 cut(s) 197, 597
BstC8I GCNNGC 2 cut(s) 319, 546
BstDEI CTNAG 1 cut(s) 434
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 4 cut(s) 78, 82, 181, 527
BstMAI GTCTC 3 cut(s) 28, 437, 476
BstMBI GATC 4 cut(s) 75, 79, 178, 524
BstMWI GCNNNNNNNGC 2 cut(s) 136, 356
BstNI CCWGG 4 cut(s) 152, 231, 356, 521
BstSCI CCNGG 4 cut(s) 150, 229, 354, 519
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 524
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 1 cut(s) 524
Bsu15I ATCGAT 1 cut(s) 78
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 1 cut(s) 150
BsuTUI ATCGAT 1 cut(s) 78
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 117, 442
BveI ACCTGC 2 cut(s) 10, 121
Cac8I GCNNGC 2 cut(s) 319, 546
Cfr13I GGNCC 1 cut(s) 530
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 26
CviAII CATG 1 cut(s) 264
CviJI RGCY 3 cut(s) 150, 305, 359
CviKI_1 RGCY 3 cut(s) 150, 305, 359
DdeI CTNAG 1 cut(s) 434
DpnI GATC 4 cut(s) 77, 81, 180, 526
DpnII GATC 4 cut(s) 75, 79, 178, 524
EaeI YGGCCR 1 cut(s) 148
Eco31I GGTCTC 2 cut(s) 28, 437
Eco47I GGWCC 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 4 cut(s) 150, 229, 354, 519
EcoT22I ATGCAT 1 cut(s) 226
FaeI CATG 1 cut(s) 267
FatI CATG 1 cut(s) 263
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 314
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 150
HgaI GACGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 267
HinfI GANTC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 4 cut(s) 200, 476, 491, 528
HpyAV CCTTC 4 cut(s) 49, 176, 365, 418
HpyCH4III ACNGT 2 cut(s) 197, 597
HpyCH4V TGCA 8 cut(s) 19, 117, 130, 224, 506, 544, 563, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 356
HpyF3I CTNAG 1 cut(s) 434
Hsp92II CATG 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 4 cut(s) 75, 79, 178, 524
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 550, 582
MaeI CTAG 1 cut(s) 314
MalI GATC 4 cut(s) 77, 81, 180, 526
MboI GATC 4 cut(s) 75, 79, 178, 524
MboII GAAGA 4 cut(s) 104, 165, 394, 506
MflI RGATCY 1 cut(s) 524
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 5 cut(s) 188, 384, 414, 451, 584
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 5 cut(s) 108, 229, 238, 280, 599
Mox20I TGGCCA 1 cut(s) 150
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 150
MseI TTAA 3 cut(s) 32, 48, 162
Msp20I TGGCCA 1 cut(s) 150
MspR9I CCNGG 4 cut(s) 152, 231, 356, 521
MvaI CCWGG 4 cut(s) 152, 231, 356, 521
MwoI GCNNNNNNNGC 2 cut(s) 136, 356
NdeII GATC 4 cut(s) 75, 79, 178, 524
NlaIII CATG 1 cut(s) 267
NsiI ATGCAT 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 384
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 4 cut(s) 150, 229, 354, 519
PspGI CCWGG 4 cut(s) 150, 229, 354, 519
PspPI GGNCC 1 cut(s) 530
PsuI RGATCY 1 cut(s) 524
SaqAI TTAA 3 cut(s) 32, 48, 162
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 4 cut(s) 75, 79, 178, 524
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 4 cut(s) 152, 231, 356, 521
SetI ASST 8 cut(s) 17, 24, 100, 135, 168, 255, 307, 535
SfaNI GCATC 2 cut(s) 550, 582
SinI GGWCC 1 cut(s) 530
Sse9I AATT 5 cut(s) 188, 384, 414, 451, 584
SsiI CCGC 1 cut(s) 461
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 4 cut(s) 150, 229, 354, 519
TaaI ACNGT 2 cut(s) 197, 597
TaqI TCGA 2 cut(s) 78, 199
TasI AATT 5 cut(s) 188, 384, 414, 451, 584
Tru1I TTAA 3 cut(s) 32, 48, 162
Tru9I TTAA 3 cut(s) 32, 48, 162
TscAI CASTG 2 cut(s) 124, 442
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 5 cut(s) 206, 306, 353, 384, 393
TspRI CASTG 2 cut(s) 124, 442
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 2 cut(s) 188, 584
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.