Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20672266 .. 20673463

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCAACAGCCATATATTTTCAGTGTCAAATCTCAGTAATGCTGACTGTAATTTACTCGGATGATCACTTTTGTCCGTGTAGTCGTATTTTCTTGCATATTTGTCTTCCCAGTTCATCGACTAATTCCTCTTCATTTTGGGTCGGACTGAATAAATTAAACGGAGATAATCATTTCTCCTCAAAACAAGAGCGTATTGGGATTCTTGCCCCTGAACTCAATCCCTCGAAGATGCTTGCGCCTCAAGACAACCAGCTGGAAGGAAGAGTCGGTTATTCAATAGAGCTATCCAGAGGAGCTATGTGGTATCACTGGCAAACAATATACAGTTGGTGGATTGATGCCAAGTTGCATAGGAAACATCAGACATCTTCAAACAGTTTTCCTAAATTCCAACAAATTGAACTCACCAATACCAGTCAATTTGTTTTGGAACCGAATTTCTGGAGACATTCCGAGCATCATAGGATCTTTTCAGAGCATAAACTCTCTAGATTTGTCAAACAACTTGTTCATAGGATCTATTTCCACAAACATTTGGTAATTGAACTCATCAATGCAAGTCTTCAAAGTTTACAAGAATTTCGCAAGTTTTGGCTCTGTGTACAAGGGGAATCTTTCCCATGGGACAACCGTTGCTGTCAAAGTTCAAGGTATGCAAATAAAAGGTGCCTCCAAAAGTTTCATTGCAGAATGAAAAGAATGGCCGGCAATCCGACATTGAAATCCTTTCAAGTGCTGCAATACATGTCTAATGGTAGTCTCGAGGAGTGGTTCTACTCTCACAGTTATTGTCTAAATCTTTTTCAAAGAGTTAGCGTGTTGGTCGATATTGCATCAGCTTTGGGATATCTCCATCAAGGTCAATCAGAGCCTGTAGTTATTAAGAACGGTGAAGAGGATTTTTCTAAAAGGGGTATGGAGAGAAAGCACAACACGTGCAACTCCTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

319

Amino Acids

37.36

Weight (kDa)

9.08

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	669
AclWI	GGATC	2 cut(s)	476, 527
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	3 cut(s)	389, 439, 581
AcvI	CACGTG	1 cut(s)	939
AfaI	GTAC	1 cut(s)	606
AflIII	ACRYGT	2 cut(s)	747, 936
AgsI	TTSAA	9 cut(s)	279, 375, 404, 548, 569, 651, 724, 734, 809
AluBI	AGCT	4 cut(s)	256, 286, 299, 842
AluI	AGCT	4 cut(s)	256, 286, 299, 842
Alw26I	GTCTC	2 cut(s)	442, 767
AlwI	GGATC	2 cut(s)	476, 527
AlwNI	CAGNNNCTG	1 cut(s)	875
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	3 cut(s)	389, 439, 581
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	400, 905
AvaI	CYCGRG	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	669
BbrPI	CACGTG	1 cut(s)	939
BbsI	GAAGAC	2 cut(s)	98, 557
BbvI	GCAGC	1 cut(s)	726
BccI	CCATC	1 cut(s)	864
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	442, 767
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	876
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
BmeT110I	CYCGRG	1 cut(s)	764
BmiI	GGNNCC	2 cut(s)	435, 671
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	4 cut(s)	222, 331, 469, 845
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	98, 557
BpmI	CTGGAG	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	939
BsaJI	CCNNGG	1 cut(s)	623
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	111, 317, 417
Bse3DI	GCAATG	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	3 cut(s)	111, 317, 417
BseRI	GAGGAG	3 cut(s)	169, 309, 782
BseXI	GCAGC	1 cut(s)	726
BshFI	GGCC	1 cut(s)	707
BshNI	GGYRCC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	708
BslFI	GGGAC	1 cut(s)	641
BsmAI	GTCTC	2 cut(s)	442, 767
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	707
BsoBI	CYCGRG	1 cut(s)	764
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	3 cut(s)	64, 468, 519
Bsp19I	CCATGG	1 cut(s)	623
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	435, 671
BspPI	GGATC	2 cut(s)	476, 527
BspT107I	GGYRCC	1 cut(s)	669
BsrDI	GCAATG	1 cut(s)	685
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	604
BsrI	ACTGG	3 cut(s)	111, 317, 417
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	1 cut(s)	623
BssMI	GATC	3 cut(s)	64, 468, 519
BssT1I	CCWWGG	1 cut(s)	623
Bst4CI	ACNGT	6 cut(s)	49, 329, 380, 635, 788, 893
Bst6I	CTCTTC	3 cut(s)	136, 259, 891
BstAUI	TGTACA	1 cut(s)	604
BstBAI	YACGTR	1 cut(s)	939
BstC8I	GCNNGC	2 cut(s)	237, 709
BstDEI	CTNAG	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	3 cut(s)	67, 471, 522
BstMAI	GTCTC	2 cut(s)	442, 767
BstMBI	GATC	3 cut(s)	64, 468, 519
BstNSI	RCATGY	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	876
BstV1I	GCAGC	1 cut(s)	726
BstV2I	GAAGAC	2 cut(s)	98, 557
BstX2I	RGATCY	2 cut(s)	468, 519
BstYI	RGATCY	2 cut(s)	468, 519
BsuRI	GGCC	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	29, 310
Cac8I	GCNNGC	2 cut(s)	237, 709
CaiI	CAGNNNCTG	1 cut(s)	875
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	707
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	2 cut(s)	624, 748
CviJI	RGCY	8 cut(s)	11, 256, 286, 299, 598, 707, 842, 874
CviKI_1	RGCY	8 cut(s)	11, 256, 286, 299, 598, 707, 842, 874
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	3 cut(s)	66, 470, 521
DpnII	GATC	3 cut(s)	64, 468, 519
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	3 cut(s)	136, 259, 891
EarI	CTCTTC	3 cut(s)	136, 259, 891
Eco130I	CCWWGG	1 cut(s)	623
Eco32I	GATATC	1 cut(s)	851
Eco72I	CACGTG	1 cut(s)	939
Eco88I	CYCGRG	1 cut(s)	764
EcoRV	GATATC	1 cut(s)	851
EcoT14I	CCWWGG	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	2 cut(s)	627, 751
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	2 cut(s)	623, 747
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	1 cut(s)	708
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	627, 751
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	202, 267, 614
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	2 cut(s)	400, 905
Hpy166II	GTNNAC	3 cut(s)	6, 575, 605
Hpy188I	TCNGA	7 cut(s)	61, 146, 366, 457, 478, 717, 871
Hpy188III	TCNNGA	5 cut(s)	245, 291, 445, 492, 764
Hpy8I	GTNNAC	3 cut(s)	6, 575, 605
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	6 cut(s)	49, 329, 380, 635, 788, 893
HpyCH4IV	ACGT	1 cut(s)	938
HpyCH4V	TGCA	8 cut(s)	97, 352, 560, 659, 690, 742, 836, 942
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	938
Hsp92II	CATG	2 cut(s)	627, 751
HspAI	GCGC	1 cut(s)	239
KroI	GCCGGC	1 cut(s)	707
KroNI	GCCGGC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	64, 468, 519
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	4 cut(s)	222, 331, 469, 845
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	938
MalI	GATC	3 cut(s)	66, 470, 521
MboI	GATC	3 cut(s)	64, 468, 519
MboII	GAAGA	7 cut(s)	98, 123, 241, 276, 363, 557, 908
MflI	RGATCY	2 cut(s)	468, 519
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	3 cut(s)	124, 418, 740
MnlI	CCTC	8 cut(s)	139, 190, 235, 252, 287, 683, 760, 892
MroNI	GCCGGC	1 cut(s)	707
MseI	TTAA	4 cut(s)	158, 885, 950, 955
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	708
NaeI	GCCGGC	1 cut(s)	709
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	3 cut(s)	64, 468, 519
NgoMIV	GCCGGC	1 cut(s)	707
NlaIII	CATG	2 cut(s)	627, 751
NlaIV	GGNNCC	2 cut(s)	435, 671
NspI	RCATGY	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	764
PciI	ACATGT	1 cut(s)	747
PdiI	GCCGGC	1 cut(s)	709
PfeI	GAWTC	2 cut(s)	202, 614
PkrI	GCNGC	1 cut(s)	741
PleI	GAGTC	1 cut(s)	275
PmaCI	CACGTG	1 cut(s)	939
PmlI	CACGTG	1 cut(s)	939
PpsI	GAGTC	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	939
PscI	ACATGT	1 cut(s)	747
PspCI	CACGTG	1 cut(s)	939
PspN4I	GGNNCC	2 cut(s)	435, 671
PstNI	CAGNNNCTG	1 cut(s)	875
PsuI	RGATCY	2 cut(s)	468, 519
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	158, 885, 950, 955
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	3 cut(s)	64, 468, 519
SchI	GAGTC	1 cut(s)	276
SetI	ASST	8 cut(s)	258, 288, 301, 656, 671, 844, 865, 941
SfaNI	GCATC	4 cut(s)	222, 331, 469, 845
SfcI	CTRYAG	1 cut(s)	876
Sfr274I	CTCGAG	1 cut(s)	764
SlaI	CTCGAG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	243, 764
SmoI	CTYRAG	2 cut(s)	243, 764
SspMI	CTAG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	6 cut(s)	49, 329, 380, 635, 788, 893
TaiI	ACGT	1 cut(s)	941
TaqI	TCGA	4 cut(s)	119, 227, 765, 828
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	2 cut(s)	202, 614
Tru1I	TTAA	4 cut(s)	158, 885, 950, 955
Tru9I	TTAA	4 cut(s)	158, 885, 950, 955
TscAI	CASTG	2 cut(s)	29, 317
TseI	GCWGC	1 cut(s)	739
TspDTI	ATGAA	5 cut(s)	105, 123, 503, 674, 710
TspGWI	ACGGA	2 cut(s)	66, 177
TspRI	CASTG	2 cut(s)	29, 317
XapI	RAATTY	3 cut(s)	389, 439, 581
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	764
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.