pycom13g23400

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
20955047 .. 20957487
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1788 bp
ATGTATTTTAACAAAATTTTATATGAAATTTCTAATAATCAATTAATCTCCATAAAAATTTATGAATTTATAAATCTATTAAATTCTCTCAAATTCTCGAATACACCCCCTAAAGAAAGAAAACCACCTGGTCTCTCCCCGAAATCCGTAGCTATTGAATCAAATATTACAGTTCTCCACCAAGCTGCTGAATCAAGATTTTTTAGGACCTTGATTTTCTCTCTCATTTCATTCCCTTCTTTATGCTTCAAAGTCAGTTCCAAGGCCTTCATCACTCCGTTTTTTGTGATGACCCCTCCTTCAATCCCCACACCAATTTCCCACACAGCCTCTACAGTCATAGGCACACCGCCAACAATGCTCTCCAAGATTAAATTCCACCCGCAGTGCATCACGAAAACTCCAGTTGAGGCATGCCCCAAGACTTGCACCTGTGGTGCCCAGGGAACTATTTTTCCATTCAGGCCACTTTTGTTAAACCCCTTGGGCAATACATCCTCTATGTTCAAATGCTGCCAGCTCGTGAGGTGGTGGTGTAACCACACTTCCAAAGCTAATATAAGCAACAGATGCAGGCTTGTGCTTGTCAAGCCATTGTCATCTTTTATCAACGGCGGCGTCAGGGACGATGTTATTAAAGTAAAGGGTCCAACGTTGAGGAACTTCTGGAATCTTGATTTGAGCAGATTCACAACTTCAGGTTCCAGTTCTTCAAAGGAGTTTATGGCAACTGCAGTTGCTTTTGGAAGTGTTTGTCCCATTTTGTATAATAGGCTTCCAACGGTTGATTCCGAGTTTCCTACGATTCCTTCAGGCTTTTTTCTTCATCTCCTGAAAGAGATTAAATATTATGATAATTTATCGAATATTCAACGATCTTCTGAGAATAAGAAACAATATAGGCAACCATTGAATTTATGGGGCATAGAATTAGATAGGCCGGTAATTGGGGGACGAATTTTAGGCTTGTATTTTACACAGCATGTCCTATGCTCGATTTTAGACGCTAGCAAATCACATAATAGTGGTCATAGGGAACTAAATAATAAACCGGAACATAAATATAGATTGCTGGCAATAGCTCGTTGGACTGCTCAGAAAAGAAGTGCCGGGCCTTGGCAGTGGCTGATGTCGGTGATGATGTCACACATCAAAAGGTTTATGGCCCCCATCAGAGACGACGTTGAGGGGGAGCGAAATGTTCAATCGCGCATGACCCCCAAAAAATTTTGGTATCTTATATTTATATGTAATAATCATACTTTTTATAAGTGTAAATATTTTTTTTTTTTTCTAAATACAAAAATTTGGAGTATTTTCTTTTCAATTTTATTATATAATAATACAATATATTCATGTCAAACTTTGAAGTTAGAGTTTTTGAAGTTTTTTTTTTTTTTTTTTTTTTTTGTTATGTATGTAACTCTTTTTACTTATTTAATGATATTTGTAAATTTACAATCAATGAGTCCTAAAGATTATTATGATTTAAGTTATTATTTTCTAGTACTAATATATTGTCCTACTTTTTTAAAAATAAAAACTATCTTAAAAATAAATCCTTCTATAAATTTTGCACATGCTCCTGAAATCACAAAGATGGTCATAAAGCCAATCTGCGCACCAGTGAGCCAAATGGCTCGTTATTCTAGGCTCATTGGCGGTTTGAAAATTCTTCTGATGCCACGCGGAAAAATCCAAATTAATTTAACAGTAACAAGTACAAATTACCGATTACTAGTGTTATTATTTTATTATACTAAAGCGAATACATTTATGATTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

596

Amino Acids

68.84

Weight (kDa)

9.81

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 71, 1269
Acc16I TGCGCA 1 cut(s) 1621
AccB1I GGYRCC 1 cut(s) 437
AccII CGCG 2 cut(s) 1210, 1689
AciI CCGC 5 cut(s) 350, 383, 615, 1662, 1689
AclI AACGTT 1 cut(s) 653
AcuI CTGAAG 2 cut(s) 681, 795
AcyI GRCGYC 1 cut(s) 618
AfaI GTAC 2 cut(s) 1509, 1723
AfiI CCNNNNNNNGG 2 cut(s) 947, 1116
AhlI ACTAGT 1 cut(s) 1738
AjnI CCWGG 2 cut(s) 127, 441
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 391, 772, 804
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
AluBI AGCT 5 cut(s) 152, 185, 520, 554, 1082
AluI AGCT 5 cut(s) 152, 185, 520, 554, 1082
Alw26I GTCTC 2 cut(s) 137, 1170
AlwNI CAGNNNCTG 1 cut(s) 1126
AoxI GGCC 5 cut(s) 264, 464, 938, 1112, 1164
ApeKI GCWGC 2 cut(s) 185, 513
AseI ATTAAT 2 cut(s) 44, 1704
AspLEI GCGC 2 cut(s) 1212, 1622
AspS9I GGNCC 4 cut(s) 207, 647, 1112, 1165
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 1 cut(s) 1147
AsuNHI GCTAGC 1 cut(s) 1007
AvaII GGWCC 2 cut(s) 207, 647
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 437
BarI GAAGNNNNNNTAC 2 cut(s) 529, 561
BauI CACGAG 1 cut(s) 521
BbvI GCAGC 2 cut(s) 172, 500
BccI CCATC 2 cut(s) 1178, 1594
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 2 cut(s) 129, 443
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 2 cut(s) 137, 1170
BcuI ACTAGT 1 cut(s) 1738
BfaI CTAG 4 cut(s) 1008, 1505, 1650, 1739
BfmI CTRYAG 2 cut(s) 333, 732
BisI GCNGC 3 cut(s) 186, 514, 616
BlsI GCNGC 3 cut(s) 187, 515, 617
BmcAI AGTACT 1 cut(s) 1509
Bme1390I CCNGG 3 cut(s) 129, 443, 1111
Bme18I GGWCC 2 cut(s) 207, 647
BmgT120I GGNCC 4 cut(s) 207, 647, 1112, 1165
BmiI GGNNCC 4 cut(s) 439, 648, 703, 1167
BmrFI CCNGG 3 cut(s) 129, 443, 1111
BmsI GCATC 3 cut(s) 399, 560, 1671
BmtI GCTAGC 1 cut(s) 1011
BpmI CTGGAG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 1111
BsaHI GRCGYC 1 cut(s) 618
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 5 cut(s) 261, 441, 442, 483, 1115
BsaWI WCCGGW 1 cut(s) 1051
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 947, 1116
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 3 cut(s) 404, 705, 1625
BseBI CCWGG 2 cut(s) 129, 443
BseDI CCNNGG 5 cut(s) 261, 441, 442, 483, 1115
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 947, 1116
BseMII CTCAG 2 cut(s) 873, 1109
BseNI ACTGG 3 cut(s) 404, 705, 1625
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 2 cut(s) 172, 500
Bsh1236I CGCG 2 cut(s) 1210, 1689
BshFI GGCC 5 cut(s) 266, 466, 940, 1114, 1166
BshNI GGYRCC 1 cut(s) 437
BsiSI CCGG 3 cut(s) 941, 1052, 1110
BslFI GGGAC 3 cut(s) 638, 741, 966
BslI CCNNNNNNNGG 2 cut(s) 947, 1116
BsmAI GTCTC 2 cut(s) 137, 1170
BsmBI CGTCTC 1 cut(s) 1170
BsmFI GGGAC 3 cut(s) 638, 741, 966
BsnI GGCC 5 cut(s) 266, 466, 940, 1114, 1166
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 1 cut(s) 875
BspACI CCGC 5 cut(s) 350, 383, 615, 1662, 1689
BspANI GGCC 5 cut(s) 266, 466, 940, 1114, 1166
BspCNI CTCAG 2 cut(s) 874, 1108
BspFNI CGCG 2 cut(s) 1210, 1689
BspLI GGNNCC 4 cut(s) 439, 648, 703, 1167
BspMAI CTGCAG 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 1011
BspT107I GGYRCC 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 940
BsrI ACTGG 3 cut(s) 404, 705, 1625
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 5 cut(s) 261, 441, 442, 483, 1115
BssMI GATC 1 cut(s) 875
BssNI GRCGYC 1 cut(s) 618
BssSI CACGAG 1 cut(s) 521
BssT1I CCWWGG 3 cut(s) 261, 483, 1115
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 129, 443
Bst4CI ACNGT 4 cut(s) 172, 337, 784, 1714
BstACI GRCGYC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 570
BstC8I GCNNGC 5 cut(s) 415, 518, 575, 1009, 1074
BstDEI CTNAG 2 cut(s) 882, 1095
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 2 cut(s) 1210, 1689
BstHHI GCGC 2 cut(s) 1212, 1622
BstKTI GATC 1 cut(s) 878
BstMAI GTCTC 2 cut(s) 137, 1170
BstMBI GATC 1 cut(s) 875
BstMWI GCNNNNNNNGC 3 cut(s) 358, 570, 589
BstNI CCWGG 2 cut(s) 129, 443
BstNSI RCATGY 3 cut(s) 417, 986, 1583
BstSCI CCNGG 3 cut(s) 127, 441, 1109
BstSFI CTRYAG 2 cut(s) 333, 732
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 2 cut(s) 1210, 1689
BstV1I GCAGC 2 cut(s) 172, 500
BsuRI GGCC 5 cut(s) 266, 466, 940, 1114, 1166
BtsCI GGATG 1 cut(s) 494
BtsI GCAGTG 2 cut(s) 392, 1127
BtsIMutI CAGTG 3 cut(s) 392, 1127, 1632
Cac8I GCNNGC 5 cut(s) 415, 518, 575, 1009, 1074
CaiI CAGNNNCTG 1 cut(s) 1126
CfoI GCGC 2 cut(s) 1212, 1622
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 4 cut(s) 207, 647, 1112, 1165
CseI GACGC 2 cut(s) 607, 1013
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 2 cut(s) 1508, 1722
CviAII CATG 5 cut(s) 414, 983, 1213, 1356, 1580
CviQI GTAC 2 cut(s) 1508, 1722
DdeI CTNAG 2 cut(s) 882, 1095
DpnI GATC 1 cut(s) 877
DpnII GATC 1 cut(s) 875
DraI TTTAAA 1 cut(s) 1533
Eco130I CCWWGG 3 cut(s) 261, 483, 1115
Eco147I AGGCCT 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 207, 647
Eco57I CTGAAG 2 cut(s) 681, 795
EcoO109I RGGNCCY 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 127, 441
EcoT14I CCWWGG 3 cut(s) 261, 483, 1115
ErhI CCWWGG 3 cut(s) 261, 483, 1115
Esp3I CGTCTC 1 cut(s) 1170
FaeI CATG 5 cut(s) 417, 986, 1216, 1359, 1583
FaqI GGGAC 3 cut(s) 638, 741, 966
FatI CATG 5 cut(s) 413, 982, 1212, 1355, 1579
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 186, 514, 616
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 3 cut(s) 186, 514, 616
FspBI CTAG 4 cut(s) 1008, 1505, 1650, 1739
FspI TGCGCA 1 cut(s) 1621
GlaI GCGC 2 cut(s) 1211, 1621
GluI GCNGC 3 cut(s) 186, 514, 616
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 5 cut(s) 266, 466, 940, 1114, 1166
HapII CCGG 3 cut(s) 941, 1052, 1110
HgaI GACGC 2 cut(s) 607, 1013
HhaI GCGC 2 cut(s) 1212, 1622
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 5 cut(s) 417, 986, 1216, 1359, 1583
Hin6I GCGC 2 cut(s) 1210, 1620
HinP1I GCGC 2 cut(s) 1210, 1620
HinfI GANTC 7 cut(s) 158, 191, 670, 687, 788, 805, 1468
HpaII CCGG 3 cut(s) 941, 1052, 1110
HphI GGTGA 1 cut(s) 1147
Hpy188I TCNGA 5 cut(s) 793, 883, 1098, 1175, 1680
Hpy188III TCNNGA 8 cut(s) 97, 195, 394, 523, 667, 674, 832, 1586
Hpy99I CGWCG 1 cut(s) 1184
HpyAV CCTTC 5 cut(s) 246, 277, 309, 819, 1572
HpyCH4III ACNGT 4 cut(s) 172, 337, 784, 1714
HpyCH4IV ACGT 2 cut(s) 653, 1182
HpyCH4V TGCA 5 cut(s) 390, 429, 573, 734, 1577
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 570, 589
HpyF3I CTNAG 2 cut(s) 882, 1095
HpySE526I ACGT 2 cut(s) 653, 1182
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 5 cut(s) 417, 986, 1216, 1359, 1583
HspAI GCGC 2 cut(s) 1210, 1620
Kzo9I GATC 1 cut(s) 875
LmnI GCTCC 2 cut(s) 1192, 1588
Lsp1109I GCAGC 2 cut(s) 172, 500
LweI GCATC 3 cut(s) 399, 560, 1671
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 4 cut(s) 1008, 1505, 1650, 1739
MaeII ACGT 2 cut(s) 653, 1182
MaeIII GTNAC 4 cut(s) 536, 1143, 1420, 1714
MalI GATC 1 cut(s) 877
MboI GATC 1 cut(s) 875
MboII GAAGA 4 cut(s) 702, 815, 870, 1667
MhlI GDGCHC 1 cut(s) 442
MlyI GAGTC 1 cut(s) 1477
MmeI TCCRAC 3 cut(s) 674, 803, 1067
MnlI CCTC 7 cut(s) 306, 340, 403, 508, 519, 651, 1180
MslI CAYNNNNRTG 2 cut(s) 1023, 1598
MspI CCGG 3 cut(s) 941, 1052, 1110
MspR9I CCNGG 3 cut(s) 129, 443, 1111
MvaI CCWGG 2 cut(s) 129, 443
MvnI CGCG 2 cut(s) 1210, 1689
MwoI GCNNNNNNNGC 3 cut(s) 358, 570, 589
NciI CCSGG 1 cut(s) 1111
NdeII GATC 1 cut(s) 875
NheI GCTAGC 1 cut(s) 1007
NlaIII CATG 5 cut(s) 417, 986, 1216, 1359, 1583
NlaIV GGNNCC 4 cut(s) 439, 648, 703, 1167
NmuCI GTSAC 1 cut(s) 1143
NsbI TGCGCA 1 cut(s) 1621
NspI RCATGY 3 cut(s) 417, 986, 1583
PaeI GCATGC 1 cut(s) 417
PasI CCCWGGG 1 cut(s) 442
PceI AGGCCT 1 cut(s) 266
PfeI GAWTC 6 cut(s) 158, 191, 670, 687, 788, 805
PkrI GCNGC 3 cut(s) 187, 515, 617
PleI GAGTC 1 cut(s) 1476
PpsI GAGTC 1 cut(s) 1476
PpuMI RGGWCCY 1 cut(s) 207
PshBI ATTAAT 2 cut(s) 44, 1704
PsiI TTATAA 2 cut(s) 71, 1269
Psp1406I AACGTT 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 127, 441
PspGI CCWGG 2 cut(s) 127, 441
PspN4I GGNNCC 4 cut(s) 439, 648, 703, 1167
PspPI GGNCC 4 cut(s) 207, 647, 1112, 1165
PspPPI RGGWCCY 1 cut(s) 207
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 1126
RsaI GTAC 2 cut(s) 1509, 1723
RsaNI GTAC 2 cut(s) 1508, 1722
RseI CAYNNNNRTG 2 cut(s) 1023, 1598
SatI GCNGC 3 cut(s) 186, 514, 616
Sau3AI GATC 1 cut(s) 875
Sau96I GGNCC 4 cut(s) 207, 647, 1112, 1165
ScaI AGTACT 1 cut(s) 1509
SchI GAGTC 1 cut(s) 1477
ScrFI CCNGG 3 cut(s) 129, 443, 1111
SduI GDGCHC 1 cut(s) 442
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 3 cut(s) 399, 560, 1671
SfcI CTRYAG 2 cut(s) 333, 732
SinI GGWCC 2 cut(s) 207, 647
SmiMI CAYNNNNRTG 2 cut(s) 1023, 1598
SpeI ACTAGT 1 cut(s) 1738
SphI GCATGC 1 cut(s) 417
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 5 cut(s) 350, 383, 615, 1662, 1689
SspI AATATT 4 cut(s) 166, 848, 868, 1280
SspMI CTAG 4 cut(s) 1008, 1505, 1650, 1739
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 3 cut(s) 127, 441, 1109
StyI CCWWGG 3 cut(s) 261, 483, 1115
TaaI ACNGT 4 cut(s) 172, 337, 784, 1714
TaiI ACGT 2 cut(s) 656, 1185
TaqI TCGA 3 cut(s) 98, 863, 995
TatI WGTACW 2 cut(s) 1507, 1721
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 6 cut(s) 158, 191, 670, 687, 788, 805
TscAI CASTG 3 cut(s) 392, 1127, 1632
TseFI GTSAC 1 cut(s) 1143
TseI GCWGC 2 cut(s) 185, 513
Tsp45I GTSAC 1 cut(s) 1143
TspDTI ATGAA 6 cut(s) 39, 78, 219, 259, 815, 1344
TspGWI ACGGA 2 cut(s) 136, 267
TspRI CASTG 3 cut(s) 392, 1127, 1632
VpaK11BI GGWCC 2 cut(s) 207, 647
VspI ATTAAT 2 cut(s) 44, 1704
XceI RCATGY 3 cut(s) 417, 986, 1583
XcmI CCANNNNNNNNNTGG 1 cut(s) 915
XspI CTAG 4 cut(s) 1008, 1505, 1650, 1739
ZrmI AGTACT 1 cut(s) 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.