Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22931799 .. 22933227

Gene Structure 1429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTATCCCAAATTTCCCTATGAATTGTTTCTTATTTCCGACAACTTTCTGTACAGATATTGATGCCCTTATGGCCCTAGCAGAGATGAGCTTCGGGATTTCAATGTCGCTCTCCTGGCAATGCAATTTTGGTTGCTTGTCTCTGAATCCACAATGTTTTGGACTCGCATTCTTAGTGGGCAATATTTCCCTTAGGAGGATGCCCTTAATGCCATTAAGAGATCTCGGGCCTCCTGGGCGTGGAGCAGTCCGTTACAAGTTCAAGCTCTCATTGTTCATGGTGTCTGCTGGCAAATCGGGGACGGTGGGCGGGTTAATATTTGGCAAGATAAATGACTTACCACATCGGGCGATGAACTTGTGCACCCTATTTTGCCAATTCCGAGCCATTCTTCGATTTTGCACCATCTCTGACCCCCTGCGGATTGTGATGCTATCGAATGCTTGGTGTTGGGCGACCTTTCTACTTCTAATCGCCTTATTTGGCTTTGAACTTCAAATGGGGATTATTCTGTTAAGTCAAGTTATGATTTTGGTCATGCGACCAACTTGCTCTACACCCGACATAAAATTTGAATTTGAATTGTTTTTTTGTTTAACTCTATTCAATAAACCCACACCCAAGGCAATAACTTATGTACTGAAATTAATGAAATTTGAAATTAATGAAGTTGGGATGGGTCTTGCTGGTGAATTAAGACAACCTTCTTGCCCTACCCAGAAGCTGTCTTGGCCATCTCGTGAGCTTGGAGAGTTTCAATGCCCGAATGAGGTTGAACTAGTGACCATCTTTGCTACTCAATTTGTATATACTTTCAATCCTCAAAAACACAGTTTATTGCAGTGTACTTTTAATAAACCATTCACTTCATATTTCAAGGTCCGAAGTTGTAAAACATTCATGAATACTGATTTTGGTAGTTTAGATAATAAATTTGGGTTTAAAGAGATATTGATAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

322

Amino Acids

36.3

Weight (kDa)

8.89

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	312, 424
AcoI	YGGCCR	1 cut(s)	734
AcsI	RAATTY	5 cut(s)	13, 572, 578, 656, 935
AfaI	GTAC	3 cut(s)	55, 642, 850
AfiI	CCNNNNNNNGG	3 cut(s)	198, 242, 772
AhlI	ACTAGT	1 cut(s)	781
AjnI	CCWGG	2 cut(s)	116, 235
AluBI	AGCT	5 cut(s)	93, 268, 727, 748, 962
AluI	AGCT	5 cut(s)	93, 268, 727, 748, 962
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	75, 230, 734
ApaLI	GTGCAC	1 cut(s)	364
ApoI	RAATTY	5 cut(s)	13, 572, 578, 656, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AseI	ATTAAT	2 cut(s)	650, 666
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	76, 230, 883
AsuHPI	GGTGA	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	883
AxyI	CCTNAGG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	736
BauI	CACGAG	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	368
BccI	CCATC	4 cut(s)	416, 673, 745, 797
BcgI	CGANNNNNNTGC	2 cut(s)	534, 568
BciT130I	CCWGG	2 cut(s)	118, 237
BcoDI	GTCTC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	781
BfaI	CTAG	2 cut(s)	80, 782
BglI	GCCNNNNNGGC	2 cut(s)	74, 238
BglII	AGATCT	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	118, 237
Bme18I	GGWCC	1 cut(s)	883
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	3 cut(s)	76, 230, 883
BmrFI	CCNGG	2 cut(s)	118, 237
BmsI	GCATC	3 cut(s)	55, 192, 423
BsaJI	CCNNGG	2 cut(s)	236, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 242, 772
Bse21I	CCTNAGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	118, 237
BseDI	CCNNGG	2 cut(s)	236, 624
BseGI	GGATG	2 cut(s)	207, 684
BseLI	CCNNNNNNNGG	3 cut(s)	198, 242, 772
BseMI	GCAATG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	368
BshFI	GGCC	3 cut(s)	77, 232, 736
BsiHKAI	GWGCWC	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	198, 242, 772
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	2 cut(s)	170, 448
BsnI	GGCC	3 cut(s)	77, 232, 736
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp1407I	TGTACA	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	312, 424
BspANI	GGCC	3 cut(s)	77, 232, 736
BspHI	TCATGA	1 cut(s)	903
BsrDI	GCAATG	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	236, 624
BssMI	GATC	1 cut(s)	223
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	118, 237
Bst4CI	ACNGT	2 cut(s)	307, 836
BstAUI	TGTACA	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	175, 194
BstF5I	GGATG	2 cut(s)	207, 684
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 118, 211, 238, 733
BstNI	CCWGG	2 cut(s)	118, 237
BstSCI	CCNGG	2 cut(s)	116, 235
BstSLI	GKGCMC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	77, 232, 736
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	207, 684
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	1 cut(s)	851
Cac8I	GCNNGC	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	727
CciI	TCATGA	1 cut(s)	903
Cfr13I	GGNCC	3 cut(s)	76, 230, 883
Csp6I	GTAC	3 cut(s)	54, 641, 849
CviAII	CATG	3 cut(s)	280, 541, 904
CviQI	GTAC	3 cut(s)	54, 641, 849
DdeI	CTNAG	2 cut(s)	175, 194
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DraI	TTTAAA	1 cut(s)	946
EaeI	YGGCCR	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	883
Eco81I	CCTNAGG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	116, 235
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	3 cut(s)	283, 544, 907
FalI	AAGNNNNNCTT	2 cut(s)	691, 723
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	279, 540, 903
FauI	CCCGC	1 cut(s)	305
FokI	GGATG	2 cut(s)	214, 691
FspBI	CTAG	2 cut(s)	80, 782
HaeIII	GGCC	3 cut(s)	77, 232, 736
Hin1II	CATG	3 cut(s)	283, 544, 907
HinfI	GANTC	2 cut(s)	148, 165
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	2 cut(s)	366, 849
Hpy188I	TCNGA	5 cut(s)	42, 147, 386, 415, 887
Hpy188III	TCNNGA	3 cut(s)	97, 743, 904
Hpy8I	GTNNAC	2 cut(s)	366, 849
HpyAV	CCTTC	1 cut(s)	717
HpyCH4III	ACNGT	2 cut(s)	307, 836
HpyCH4V	TGCA	4 cut(s)	126, 366, 405, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 118, 211, 238, 733
HpyF3I	CTNAG	2 cut(s)	175, 194
Hsp92II	CATG	3 cut(s)	283, 544, 907
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	8 cut(s)	103, 130, 222, 249, 276, 434, 675, 734
LweI	GCATC	3 cut(s)	55, 192, 423
MaeI	CTAG	2 cut(s)	80, 782
MaeIII	GTNAC	2 cut(s)	254, 784
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	368
MlsI	TGGCCA	1 cut(s)	736
MluNI	TGGCCA	1 cut(s)	736
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	192, 243, 766, 834
Mox20I	TGGCCA	1 cut(s)	736
MroXI	GAANNNNTTC	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	736
Msp20I	TGGCCA	1 cut(s)	736
MspR9I	CCNGG	2 cut(s)	118, 237
Mva1269I	GAATGC	2 cut(s)	170, 448
MvaI	CCWGG	2 cut(s)	118, 237
MwoI	GCNNNNNNNGC	5 cut(s)	74, 118, 211, 238, 733
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	283, 544, 907
NmuCI	GTSAC	1 cut(s)	784
PagI	TCATGA	1 cut(s)	903
PctI	GAATGC	2 cut(s)	170, 448
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PshBI	ATTAAT	2 cut(s)	650, 666
Psp6I	CCWGG	2 cut(s)	116, 235
PspGI	CCWGG	2 cut(s)	116, 235
PspPI	GGNCC	3 cut(s)	76, 230, 883
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	3 cut(s)	55, 642, 850
RsaNI	GTAC	3 cut(s)	54, 641, 849
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	3 cut(s)	76, 230, 883
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	118, 237
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	9 cut(s)	95, 270, 464, 709, 729, 750, 777, 885, 964
SfaNI	GCATC	3 cut(s)	55, 192, 423
SinI	GGWCC	1 cut(s)	883
SpeI	ACTAGT	1 cut(s)	781
SsiI	CCGC	2 cut(s)	312, 424
SspI	AATATT	2 cut(s)	187, 321
SspMI	CTAG	2 cut(s)	80, 782
StyD4I	CCNGG	2 cut(s)	116, 235
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	307, 836
TaqI	TCGA	2 cut(s)	397, 440
TatI	WGTACW	3 cut(s)	53, 640, 848
TfiI	GAWTC	1 cut(s)	148
TscAI	CASTG	1 cut(s)	851
TseFI	GTSAC	1 cut(s)	784
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	8 cut(s)	38, 268, 371, 668, 684, 861, 892, 920
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	851
VneI	GTGCAC	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	883
VspI	ATTAAT	2 cut(s)	650, 666
XapI	RAATTY	5 cut(s)	13, 572, 578, 656, 935
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	80, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.