Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23435974 .. 23438097

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGATTCTTTTGCTGAAATTTAGTTCTGGGCTCCCATTTTTTTCCTCTAGAATTCCAGTTCTTTTGACTCTTGAAAGCATTAGATTGATGCTTTCTCAGTGGTATCAGATGAATGCAAATCAAAACTCAACAGTCTATACATTTTGTATTCTCAATCACAAGACAAATGGGATCGATAAGGTTTTAATCAATTCATTCAAACAAGTAAGATACCCAGATAATGATTCATCATCATGCATTCTAGTATACTCAAATTCACGGTATTCTCCATATAATAGATCCCAGGCCATCTTCTATGCACTCTGCATAATACCCAGAGCTTTTGCATCTTGCATATACATAGCCGCTGCTTGTTCATCATCTTCATCTCCTAAGCTCCCTTCGACCTTTTTCTTTTTCTTTGAATCTGGGATTATGACCCCTTGTCAACTAATCTCCATAAAAATTGGTGTTCGCACCTCAGAGCTTCCAGATCCAACCATTTCACACTTCGATTTTGTTGGATTAAGGCAAATTCCAACCTCTTCGAAACTTGAGAGCTTGATTCTCAGACCAAACAATCTCCAATTTCACAGATTATGCCCAGATTTTGCGATGCAACCTGGCTCTAAGGTCATTTTAGTGTTCTTGGAAATTATGAGATTGGTTTGCAAGAGACTGATTTTGATATTCTCTTCTCTGCAAATTAGCAGAAGAATATATGCTCAGTATCCCAGTTCGTTACACAACTGGAATTTTCACAATTACAACCAAATGATTTCATTAGGAAAAGGGTTATTTCTAAAACGGCTCATAACTTACAATTCAACAGATGTGGTAAGAACAGATAGTCATCTTGAATTCTACAAGGATGTAAAAAATTTAGCTAGGATGTCATATACTTGCTGTTTATGCATGGGTGGATCCAGCTACAGGACATTGTTAAGGTTGTTTTGTTATTATTTTTGTTTTCTTAATGCAACACTTATTTTCTTGACAAAAACCCATCTCGTTTTATACATCCAAATAAAACCTCATATTTTCAGTAATTTCTTTCATACGGTAAAATCTAAAGTTACCAACTTATCTCAAAAGCTGCAGATTGACTTGCTGTCTCCATTTCTCGTTGTCTTTGAGGATAATGCTGATCTTTACAAATATGTTGAGCTTGATAGTTCTATACTCAATCACTTACATTTTCTTTTCAAACCCTTCATTCAGCGTGAAAAATTCCAAATGGAAGGACCGACTGGGGTAATGAAGCAGTTGCAAGCATTGTGGAATATCTTGGAACTCACAGACAGGGAAATAGTTGCACACCTGTCACACATGGGTGCTGAAAGCATGCATTTTGCATTCCAAATGCTGCTCATTCTCTTTCGTCGGGAGTTGTCTTTTAATGATGGTCTTTGTATGTGGGAGCTTTGTGCTATTCATTATGAAAATTTGGACTACAGAGCCTGCATCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030659 GO:0030695 GO:0031090 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

484

Amino Acids

56.06

Weight (kDa)

9.0

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	5 cut(s)	179, 273, 467, 897, 910
AcsI	RAATTY	9 cut(s)	17, 51, 253, 513, 733, 839, 859, 1208, 1423
AfiI	CCNNNNNNNGG	1 cut(s)	912
AgsI	TTSAA	6 cut(s)	74, 199, 404, 807, 839, 1186
AhdI	GACNNNNNGTC	2 cut(s)	423, 1090
AjnI	CCWGG	2 cut(s)	282, 601
AleI	CACNNNNGTG	1 cut(s)	1311
AluBI	AGCT	9 cut(s)	320, 376, 466, 540, 866, 909, 1075, 1147, 1402
AluI	AGCT	9 cut(s)	320, 376, 466, 540, 866, 909, 1075, 1147, 1402
Alw26I	GTCTC	2 cut(s)	649, 1098
AlwI	GGATC	5 cut(s)	179, 273, 467, 897, 910
AlwNI	CAGNNNCTG	1 cut(s)	1440
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	3 cut(s)	347, 1075, 1345
ApoI	RAATTY	9 cut(s)	17, 51, 253, 513, 733, 839, 859, 1208, 1423
AspS9I	GGNCC	1 cut(s)	1223
AsuII	TTCGAA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	1223
BamHI	GGATCC	1 cut(s)	902
BanII	GRGCYC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	334, 1062, 1332
BccI	CCATC	3 cut(s)	296, 993, 1376
BceAI	ACGGC	1 cut(s)	803
BciT130I	CCWGG	2 cut(s)	284, 603
BciVI	GTATCC	1 cut(s)	720
BcoDI	GTCTC	2 cut(s)	649, 1098
BfaI	CTAG	3 cut(s)	48, 242, 867
BfmI	CTRYAG	3 cut(s)	910, 1076, 1432
BfuI	GTATCC	1 cut(s)	720
BisI	GCNGC	4 cut(s)	345, 348, 1076, 1346
BlsI	GCNGC	4 cut(s)	346, 349, 1077, 1347
Bme1390I	CCNGG	2 cut(s)	284, 603
Bme18I	GGWCC	1 cut(s)	1223
BmeRI	GACNNNNNGTC	2 cut(s)	423, 1090
BmgT120I	GGNCC	1 cut(s)	1223
BmiI	GGNNCC	2 cut(s)	32, 904
BmrFI	CCNGG	2 cut(s)	284, 603
BmrI	ACTGGG	2 cut(s)	708, 1239
BmsI	GCATC	3 cut(s)	78, 335, 585
BmuI	ACTGGG	2 cut(s)	708, 1239
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	554
Bsa29I	ATCGAT	2 cut(s)	174, 1446
BsaBI	GATNNNNATC	1 cut(s)	831
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	912
Bse1I	ACTGG	4 cut(s)	56, 714, 734, 1234
Bse8I	GATNNNNATC	1 cut(s)	831
BseBI	CCWGG	2 cut(s)	284, 603
BseCI	ATCGAT	2 cut(s)	174, 1446
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	3 cut(s)	856, 876, 999
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	1 cut(s)	912
BseMII	CTCAG	4 cut(s)	110, 474, 562, 719
BseNI	ACTGG	4 cut(s)	56, 714, 734, 1234
BseXI	GCAGC	3 cut(s)	334, 1062, 1332
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	2 cut(s)	174, 1446
BslI	CCNNNNNNNGG	1 cut(s)	912
BsmAI	GTCTC	2 cut(s)	649, 1098
BsmI	GAATGC	3 cut(s)	118, 237, 1334
BsnI	GGCC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	5 cut(s)	171, 278, 472, 902, 1126
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	4 cut(s)	109, 473, 561, 718
BspDI	ATCGAT	2 cut(s)	174, 1446
BspLI	GGNNCC	2 cut(s)	32, 904
BspMAI	CTGCAG	1 cut(s)	1080
BspPI	GGATC	5 cut(s)	179, 273, 467, 897, 910
BspT104I	TTCGAA	1 cut(s)	527
BsrI	ACTGG	4 cut(s)	56, 714, 734, 1234
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	5 cut(s)	171, 278, 472, 902, 1126
BssNAI	GTATAC	1 cut(s)	247
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	284, 603
Bst4CI	ACNGT	3 cut(s)	133, 261, 1042
Bst6I	CTCTTC	2 cut(s)	529, 679
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	1251, 1325, 1441
BstDEI	CTNAG	6 cut(s)	96, 372, 460, 548, 609, 705
BstF5I	GGATG	3 cut(s)	856, 876, 999
BstKTI	GATC	5 cut(s)	174, 281, 475, 905, 1129
BstMAI	GTCTC	2 cut(s)	649, 1098
BstMBI	GATC	5 cut(s)	171, 278, 472, 902, 1126
BstMWI	GCNNNNNNNGC	1 cut(s)	891
BstNI	CCWGG	2 cut(s)	284, 603
BstNSI	RCATGY	1 cut(s)	1327
BstSCI	CCNGG	2 cut(s)	282, 601
BstSFI	CTRYAG	3 cut(s)	910, 1076, 1432
BstV1I	GCAGC	3 cut(s)	334, 1062, 1332
BstX2I	RGATCY	3 cut(s)	278, 472, 902
BstYI	RGATCY	3 cut(s)	278, 472, 902
BstZ17I	GTATAC	1 cut(s)	247
Bsu15I	ATCGAT	2 cut(s)	174, 1446
BsuI	GTATCC	1 cut(s)	720
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	2 cut(s)	174, 1446
BtgZI	GCGATG	1 cut(s)	608
BtsCI	GGATG	3 cut(s)	856, 876, 999
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	1251, 1325, 1441
CaiI	CAGNNNCTG	1 cut(s)	1440
Cfr13I	GGNCC	1 cut(s)	1223
ClaI	ATCGAT	2 cut(s)	174, 1446
CspCI	CAANNNNNGTGG	4 cut(s)	795, 830, 1238, 1273
CviAII	CATG	4 cut(s)	234, 895, 1309, 1324
DdeI	CTNAG	6 cut(s)	96, 372, 460, 548, 609, 705
DpnI	GATC	5 cut(s)	173, 280, 474, 904, 1128
DpnII	GATC	5 cut(s)	171, 278, 472, 902, 1126
DriI	GACNNNNNGTC	2 cut(s)	423, 1090
Eam1104I	CTCTTC	2 cut(s)	529, 679
Eam1105I	GACNNNNNGTC	2 cut(s)	423, 1090
EarI	CTCTTC	2 cut(s)	529, 679
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	1223
EcoRI	GAATTC	2 cut(s)	51, 839
EcoRII	CCWGG	2 cut(s)	282, 601
EcoT22I	ATGCAT	3 cut(s)	239, 896, 1329
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	4 cut(s)	237, 898, 1312, 1327
FatI	CATG	4 cut(s)	233, 894, 1308, 1323
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	345, 348, 1076, 1346
FokI	GGATG	3 cut(s)	863, 883, 986
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	4 cut(s)	345, 348, 1076, 1346
FspBI	CTAG	3 cut(s)	48, 242, 867
GluI	GCNGC	4 cut(s)	345, 348, 1076, 1346
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	237, 898, 1312, 1327
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HinfI	GANTC	5 cut(s)	4, 67, 224, 404, 544
Hpy166II	GTNNAC	2 cut(s)	247, 428
Hpy188I	TCNGA	3 cut(s)	108, 463, 551
Hpy188III	TCNNGA	6 cut(s)	48, 71, 470, 836, 973, 1364
Hpy8I	GTNNAC	2 cut(s)	247, 428
Hpy99I	CGWCG	1 cut(s)	1365
HpyAV	CCTTC	3 cut(s)	390, 1201, 1214
HpyCH4III	ACNGT	3 cut(s)	133, 261, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	891
HpyF3I	CTNAG	6 cut(s)	96, 372, 460, 548, 609, 705
Hsp92II	CATG	4 cut(s)	237, 898, 1312, 1327
Kzo9I	GATC	5 cut(s)	171, 278, 472, 902, 1126
LmnI	GCTCC	3 cut(s)	36, 381, 1399
Lsp1109I	GCAGC	3 cut(s)	334, 1062, 1332
LweI	GCATC	3 cut(s)	78, 335, 585
MaeI	CTAG	3 cut(s)	48, 242, 867
MaeIII	GTNAC	3 cut(s)	720, 1054, 1302
MalI	GATC	5 cut(s)	173, 280, 474, 904, 1128
MboI	GATC	5 cut(s)	171, 278, 472, 902, 1126
MboII	GAAGA	5 cut(s)	283, 354, 516, 666, 705
MflI	RGATCY	3 cut(s)	278, 472, 902
MhlI	GDGCHC	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	3 cut(s)	481, 500, 542
MnlI	CCTC	5 cut(s)	55, 469, 532, 1023, 1108
Mph1103I	ATGCAT	3 cut(s)	239, 896, 1329
MseI	TTAA	5 cut(s)	185, 506, 923, 954, 1377
MslI	CAYNNNNRTG	3 cut(s)	232, 620, 1311
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	284, 603
Mva1269I	GAATGC	3 cut(s)	118, 237, 1334
MvaI	CCWGG	2 cut(s)	284, 603
MwoI	GCNNNNNNNGC	1 cut(s)	891
NdeII	GATC	5 cut(s)	171, 278, 472, 902, 1126
NlaIII	CATG	4 cut(s)	237, 898, 1312, 1327
NlaIV	GGNNCC	2 cut(s)	32, 904
NmuCI	GTSAC	1 cut(s)	1302
NsiI	ATGCAT	3 cut(s)	239, 896, 1329
NspI	RCATGY	1 cut(s)	1327
NspV	TTCGAA	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	1311
PaeI	GCATGC	1 cut(s)	1327
PctI	GAATGC	3 cut(s)	118, 237, 1334
PfeI	GAWTC	4 cut(s)	4, 224, 404, 544
PkrI	GCNGC	4 cut(s)	346, 349, 1077, 1347
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	282, 601
PspGI	CCWGG	2 cut(s)	282, 601
PspN4I	GGNNCC	2 cut(s)	32, 904
PspPI	GGNCC	1 cut(s)	1223
PstI	CTGCAG	1 cut(s)	1080
PstNI	CAGNNNCTG	1 cut(s)	1440
PsuI	RGATCY	3 cut(s)	278, 472, 902
RseI	CAYNNNNRTG	3 cut(s)	232, 620, 1311
SaqAI	TTAA	5 cut(s)	185, 506, 923, 954, 1377
SatI	GCNGC	4 cut(s)	345, 348, 1076, 1346
Sau3AI	GATC	5 cut(s)	171, 278, 472, 902, 1126
Sau96I	GGNCC	1 cut(s)	1223
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	284, 603
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	3 cut(s)	78, 335, 585
SfcI	CTRYAG	3 cut(s)	910, 1076, 1432
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	1 cut(s)	1223
SmiMI	CAYNNNNRTG	3 cut(s)	232, 620, 1311
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	1327
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	3 cut(s)	48, 242, 867
StyD4I	CCNGG	2 cut(s)	282, 601
TaaI	ACNGT	3 cut(s)	133, 261, 1042
TaqI	TCGA	5 cut(s)	174, 383, 492, 527, 1446
TaqII	GACCGA	1 cut(s)	1240
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	4 cut(s)	4, 224, 404, 544
Tru1I	TTAA	5 cut(s)	185, 506, 923, 954, 1377
Tru9I	TTAA	5 cut(s)	185, 506, 923, 954, 1377
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	1302
TseI	GCWGC	3 cut(s)	347, 1075, 1345
Tsp45I	GTSAC	1 cut(s)	1302
TspRI	CASTG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	1223
XapI	RAATTY	9 cut(s)	17, 51, 253, 513, 733, 839, 859, 1208, 1423
XbaI	TCTAGA	1 cut(s)	47
XceI	RCATGY	1 cut(s)	1327
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	3 cut(s)	48, 242, 867
Zsp2I	ATGCAT	3 cut(s)	239, 896, 1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.