pycom13g27170

trigalactosyldiacylglycerol 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
23545111 .. 23545380
270 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGGAAACTAAAATTGACATTACACCTAGAGACCCACTTCCGAATATTTCAGTTGGGCCTCTCGATCCTGAATGTTGCAAAGAAGGTCTGATTGTCTGTGACAGACAAAAGATGAGAGGACATCAAGGTGTGAGTCTAGATGCATTGGTAGGTATATTTACCCGTCTTGGACGTGAAGTGGAGGAGATTGGTATAGTAAACACATATTCACTCGCTGAACGAATTGCTTCTGTGATAGAAGAGGCAAAGCCACTGCTTATACAGGTGTGA

Protein Analysis

90

Amino Acids

9.8

Weight (kDa)

4.89

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 59
AjiI CACGTC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 27, 137
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 56
BmsI GCATC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 58
Bso31I GGTCTC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 24
BssMI GATC 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 234
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 58
BtrI CACGTC 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 56
CviJI RGCY 2 cut(s) 58, 250
CviKI_1 RGCY 2 cut(s) 58, 250
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 145
FaiI YATR 4 cut(s) 155, 194, 205, 260
FspBI CTAG 2 cut(s) 27, 137
HaeIII GGCC 1 cut(s) 58
HinfI GANTC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 42, 90
Hpy188III TCNNGA 3 cut(s) 62, 68, 137
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 78, 143
HpySE526I ACGT 1 cut(s) 172
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 2 cut(s) 81, 248
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 27, 137
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 251
MluCI AATT 2 cut(s) 12, 222
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 4 cut(s) 69, 110, 175, 235
Mph1103I ATGCAT 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 226
MslI CAYNNNNRTG 1 cut(s) 126
NdeII GATC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 226
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 126
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 142
SetI ASST 6 cut(s) 28, 88, 130, 154, 175, 267
SfaNI GCATC 1 cut(s) 130
SgeI CNNG 9 cut(s) 39, 74, 80, 137, 149, 174, 179, 185, 224
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 2 cut(s) 12, 222
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 27, 137
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 12, 222
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspRI CASTG 1 cut(s) 258
XbaI TCTAGA 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 2 cut(s) 27, 137
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.