Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23667215 .. 23667759

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAATATCGTGGACCATCATCCTCAAATAGCACAAGACCACAAGGCAGAAGAGCACCTTTCAATAGCATAATGATGCACCATGGACCTCTATCATTCAATGGATTCCAAAATAGCATAAGCAGACCAGCAACACCATCAGTACCCACGTATAGGTCAAGGGTACCAAAACTCTCTAATAGGCAACATGTTCTCCAAGATAATTTTTGGAATATCCAAATCAAACAGCCAAGCATGAGGTTAGGTCATGAAAAACTAATTAGAGCCTTAGAACAAGAGTTTGATAGCGTTAATTTTAATTTCCATCAAAGGCAGCATCATATTCATTCTCTTAAGCACAACCTTCAAGTCATTTCTAGAGACCATGAAATGCAGCAACAGTCAAGTGACACCTTGAAAAGAAAATTGAAAATAGGTTTGGAAACTAATCAACATAAGAATAAAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005384 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015410 GO:0015662 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022622 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071421 GO:0072511 GO:0090662 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0099131 GO:0099132 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04972 ko05010 map04020 map04022 map04972 map05010

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

151

Amino Acids

17.62

Weight (kDa)

11.0

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	163
AfaI	GTAC	2 cut(s)	144, 165
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	5 cut(s)	64, 100, 347, 397, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	313, 373
Asp718I	GGTACC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	14, 86
AvaII	GGWCC	2 cut(s)	14, 86
BanI	GGYRCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	325, 385
BccI	CCATC	3 cut(s)	25, 145, 312
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	332
BisI	GCNGC	2 cut(s)	314, 374
BlsI	GCNGC	2 cut(s)	315, 375
Bme18I	GGWCC	2 cut(s)	14, 86
BmgT120I	GGNCC	2 cut(s)	14, 86
BmiI	GGNNCC	1 cut(s)	165
BmsI	GCATC	2 cut(s)	66, 325
BsaAI	YACGTR	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	325, 385
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	354
Bso31I	GGTCTC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	163
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	325, 385
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	14, 86
Csp6I	GTAC	2 cut(s)	143, 164
CviAII	CATG	5 cut(s)	83, 188, 235, 248, 365
CviJI	RGCY	2 cut(s)	229, 266
CviKI_1	RGCY	2 cut(s)	229, 266
CviQI	GTAC	2 cut(s)	143, 164
DdeI	CTNAG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	14, 86
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	86, 191, 238, 251, 368
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FatI	CATG	5 cut(s)	82, 187, 234, 247, 364
Fnu4HI	GCNGC	2 cut(s)	314, 374
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	2 cut(s)	314, 374
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	2 cut(s)	314, 374
Hin1II	CATG	5 cut(s)	86, 191, 238, 251, 368
HinfI	GANTC	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188III	TCNNGA	2 cut(s)	248, 357
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	79, 373
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	5 cut(s)	86, 191, 238, 251, 368
KpnI	GGTACC	1 cut(s)	167
LguI	GCTCTTC	1 cut(s)	46
LpnPI	CCDG	1 cut(s)	141
Lsp1109I	GCAGC	2 cut(s)	325, 385
LweI	GCATC	2 cut(s)	66, 325
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	386
MboII	GAAGA	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	5 cut(s)	202, 258, 292, 298, 404
MnlI	CCTC	3 cut(s)	34, 99, 231
MseI	TTAA	3 cut(s)	291, 297, 333
MslI	CAYNNNNRTG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	82
NlaIII	CATG	5 cut(s)	86, 191, 238, 251, 368
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	1 cut(s)	191
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	315, 375
Ppu21I	YACGTR	1 cut(s)	150
PscI	ACATGT	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	14, 86
RsaI	GTAC	2 cut(s)	144, 165
RsaNI	GTAC	2 cut(s)	143, 164
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	291, 297, 333
SatI	GCNGC	2 cut(s)	314, 374
Sau96I	GGNCC	2 cut(s)	14, 86
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	9 cut(s)	61, 91, 152, 158, 242, 247, 345, 395, 418
SfaNI	GCATC	2 cut(s)	66, 325
SinI	GGWCC	2 cut(s)	14, 86
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	5 cut(s)	202, 258, 292, 298, 404
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	1 cut(s)	152
TasI	AATT	5 cut(s)	202, 258, 292, 298, 404
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	3 cut(s)	291, 297, 333
Tru9I	TTAA	3 cut(s)	291, 297, 333
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	313, 373
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	264, 314, 381
Vha464I	CTTAAG	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	14, 86
XbaI	TCTAGA	1 cut(s)	356
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.