Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23691321 .. 23693182

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCAACAATTGTCTACACTGTTAAAAACTTTGCGTGGAGGAGCTAGTCGATCGCTTAAATTCGCCAAATTCTGCAGTGTTGTTAATAAGTCCCCCTCATTACATATTGAATTGGTACCATGTCTTAGAGATAACTATGCACATCTTTTACATGATGAGGATACTGGTGTTGTTGATCCTTCTGAAGCTCTACCTGTTATAGAAGCTTTGTGTCGGAAAAACAGAAATTTGGCATACATACTGAACACACACCATCATCACGATCACACTGGTGGTAATGCCAAGTTAAAAGCAAGGTGCGGTGCAAAGGTGATTGGTTCAGGAATAGACAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004416 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008270 GO:0008800 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010033 GO:0010243 GO:0016787 GO:0016788 GO:0016790 GO:0016810 GO:0016812 GO:0034059 GO:0036293 GO:0042221 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070482 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

HAGH_C Lactamase_B

Protein Analysis

113

Amino Acids

12.3

Weight (kDa)

9.02

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	55 - 106	1.7e-08	Metallo-beta-lactamase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	3 cut(s)	59, 68, 226
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	110
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	3 cut(s)	44, 188, 206
AluI	AGCT	3 cut(s)	44, 188, 206
AlwI	GGATC	1 cut(s)	170
ApoI	RAATTY	3 cut(s)	59, 68, 226
Asp718I	GGTACC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	322
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BanI	GGYRCC	1 cut(s)	115
BccI	CCATC	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	169, 274
BseNI	ACTGG	2 cut(s)	169, 274
BseRI	GAGGAG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	50, 175, 262
BspACI	CCGC	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	169, 274
BssMI	GATC	3 cut(s)	50, 175, 262
Bst4CI	ACNGT	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	125
BstKTI	GATC	3 cut(s)	53, 178, 265
BstMBI	GATC	3 cut(s)	50, 175, 262
BstMCI	CGRYCG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	3 cut(s)	17, 82, 267
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	120, 152
CviJI	RGCY	3 cut(s)	44, 188, 206
CviKI_1	RGCY	3 cut(s)	44, 188, 206
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	52, 177, 264
DpnII	GATC	3 cut(s)	50, 175, 262
Eco57I	CTGAAG	1 cut(s)	204
FaeI	CATG	2 cut(s)	123, 155
FaiI	YATR	7 cut(s)	105, 121, 138, 153, 200, 235, 239
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	119, 151
FblI	GTMKAC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	45
Hin1II	CATG	2 cut(s)	123, 155
HindIII	AAGCTT	1 cut(s)	204
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	184, 216
Hpy188III	TCNNGA	2 cut(s)	260, 321
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	4, 75, 140, 305
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	123, 155
KpnI	GGTACC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	50, 175, 262
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	5 cut(s)	150, 207, 255, 306, 316
MaeI	CTAG	1 cut(s)	45
MalI	GATC	3 cut(s)	52, 177, 264
MboI	GATC	3 cut(s)	50, 175, 262
MfeI	CAATTG	1 cut(s)	8
MluCI	AATT	5 cut(s)	8, 59, 68, 110, 226
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	32, 106, 151
MseI	TTAA	4 cut(s)	23, 57, 84, 287
MslI	CAYNNNNRTG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	8
NdeII	GATC	3 cut(s)	50, 175, 262
NlaIII	CATG	2 cut(s)	123, 155
NlaIV	GGNNCC	1 cut(s)	117
OliI	CACNNNNGTG	1 cut(s)	270
Ple19I	CGATCG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	23, 57, 84, 287
Sau3AI	GATC	3 cut(s)	50, 175, 262
SetI	ASST	6 cut(s)	46, 190, 196, 208, 299, 312
SfcI	CTRYAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	5 cut(s)	8, 59, 68, 110, 226
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	49
TasI	AATT	5 cut(s)	8, 59, 68, 110, 226
Tru1I	TTAA	4 cut(s)	23, 57, 84, 287
Tru9I	TTAA	4 cut(s)	23, 57, 84, 287
TscAI	CASTG	3 cut(s)	24, 82, 274
TspRI	CASTG	3 cut(s)	24, 82, 274
XapI	RAATTY	3 cut(s)	59, 68, 226
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.