Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23693225 .. 23695856

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTTGCACGGCACGAGGAGCAGGTTATGGAGACTCCTGGGCATACTAAAGGTCACGTTAGCTTCTACTTTCCTGGATCAGGGGCAATTTTTACTGGTGATACTCTCTTCAGCTTATCATGTGGCAAGCTGCTTGAAGGAACACCTGAGCAGGCAATCTTCCCTTACAAAGATCACATCTTTGCCAGATGGCACAGATGCATACTGTGGTCATGTATATACCGTGGTTCCAACCAGATTAAAACTGGAATAGGCATGCAATCCTTTTCTTCGCACTTCAAGTCGAGAGATTCGACAGTCATTGAAGATTCCAGCCACAGCAAACGATACGCCAAGCAAAGGATACTTTTTGAACTTGTCAAGATTTTTTTTTTTTTTTTTTTTTTTTCTTCCTGGAACAAGTTTTCTTTGTATATTAAGATTGAGATAAACCAACCATTTTGTGAAATAAGTACAGCTAAGATATATGCATTTGTCTATTCATGGCCTCTTGTGTTTGGTACTGTACCAAAAAGGACTTTGAACTCTTATTATTTTTTAAGAGAAAAATTGATGATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004416 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008270 GO:0008800 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010033 GO:0010243 GO:0016787 GO:0016788 GO:0016790 GO:0016810 GO:0016812 GO:0034059 GO:0036293 GO:0042221 GO:0043167 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070482 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

HAGH_C Lactamase_B

Protein Analysis

188

Amino Acids

21.96

Weight (kDa)

9.45

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	4 - 46	7.2e-08	Metallo-beta-lactamase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	3 cut(s)	454, 502, 507
AfiI	CCNNNNNNNGG	2 cut(s)	80, 339
AgsI	TTSAA	5 cut(s)	137, 280, 305, 353, 523
AjnI	CCWGG	3 cut(s)	37, 73, 392
AluBI	AGCT	4 cut(s)	63, 114, 130, 458
AluI	AGCT	4 cut(s)	63, 114, 130, 458
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	110
BauI	CACGAG	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	3 cut(s)	39, 75, 394
BciVI	GTATCC	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	336
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	3 cut(s)	39, 75, 394
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	39, 75, 394
BmsI	GCATC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	38, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 339
Bse1I	ACTGG	2 cut(s)	100, 250
BseBI	CCWGG	3 cut(s)	39, 75, 394
BseDI	CCNNGG	2 cut(s)	38, 223
BseLI	CCNNNNNNNGG	2 cut(s)	80, 339
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	100, 250
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	80, 339
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	77, 172
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	100, 250
BssECI	CCNNGG	2 cut(s)	38, 223
BssMI	GATC	2 cut(s)	77, 172
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	3 cut(s)	39, 75, 394
Bst4CI	ACNGT	4 cut(s)	207, 224, 298, 505
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	128, 153, 257
BstDEI	CTNAG	2 cut(s)	147, 459
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	80, 175
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	77, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	3 cut(s)	39, 75, 394
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	37, 73, 392
BstV1I	GCAGC	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	487
BtgI	CCRYGG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	128, 153, 257
Csp6I	GTAC	3 cut(s)	453, 501, 506
CviAII	CATG	4 cut(s)	120, 213, 256, 483
CviJI	RGCY	6 cut(s)	63, 114, 130, 315, 458, 487
CviKI_1	RGCY	6 cut(s)	63, 114, 130, 315, 458, 487
CviQI	GTAC	3 cut(s)	453, 501, 506
DdeI	CTNAG	2 cut(s)	147, 459
DpnI	GATC	2 cut(s)	79, 174
DpnII	GATC	2 cut(s)	77, 172
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	37, 73, 392
EcoT22I	ATGCAT	2 cut(s)	203, 472
FaeI	CATG	4 cut(s)	123, 216, 259, 486
FatI	CATG	4 cut(s)	119, 212, 255, 482
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	487
Hin1II	CATG	4 cut(s)	123, 216, 259, 486
HinfI	GANTC	3 cut(s)	34, 290, 308
HphI	GGTGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	285, 361
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	4 cut(s)	207, 224, 298, 505
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	8, 201, 259, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	147, 459
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	123, 216, 259, 486
Kzo9I	GATC	2 cut(s)	77, 172
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	188
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	79, 174
MboI	GATC	2 cut(s)	77, 172
MboII	GAAGA	5 cut(s)	100, 151, 261, 317, 381
MluCI	AATT	2 cut(s)	87, 548
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	10, 498
Mph1103I	ATGCAT	2 cut(s)	203, 472
MseI	TTAA	3 cut(s)	240, 417, 539
MspR9I	CCNGG	3 cut(s)	39, 75, 394
MvaI	CCWGG	3 cut(s)	39, 75, 394
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	2 cut(s)	77, 172
NlaIII	CATG	4 cut(s)	123, 216, 259, 486
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	53
NsiI	ATGCAT	2 cut(s)	203, 472
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	290, 308
PfoI	TCCNGGA	2 cut(s)	73, 392
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	3 cut(s)	37, 73, 392
PspGI	CCWGG	3 cut(s)	37, 73, 392
PspN4I	GGNNCC	1 cut(s)	229
RsaI	GTAC	3 cut(s)	454, 502, 507
RsaNI	GTAC	3 cut(s)	453, 501, 506
SaqAI	TTAA	3 cut(s)	240, 417, 539
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	77, 172
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	39, 75, 394
SetI	ASST	8 cut(s)	27, 55, 60, 65, 116, 132, 148, 460
SfaNI	GCATC	1 cut(s)	188
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	87, 548
StyD4I	CCNGG	3 cut(s)	37, 73, 392
TaaI	ACNGT	4 cut(s)	207, 224, 298, 505
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	284, 293
TasI	AATT	2 cut(s)	87, 548
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	290, 308
Tru1I	TTAA	3 cut(s)	240, 417, 539
Tru9I	TTAA	3 cut(s)	240, 417, 539
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	471
XagI	CCTNNNNNAGG	1 cut(s)	78
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
Zsp2I	ATGCAT	2 cut(s)	203, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.