Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24267728 .. 24268443

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTAATTTTTTGTGTGCTGATTAAATGTTTCCATCACTTGTATTTGTCTCCTTTTGATTTTATGTTTTTCATTATCAATGCGCTTGTAACCCCAACGTTTCTTTATCCACGAAGGTTCTGCTGTACAGTCACCTCTGATTTTTCTCAATGGGTATTTTCTTCATTTTGTGCAGGGCCTTGGCAGGTAATGCTCAAACAAGCCGATGGTTCTTATGCTTGCGTAGCAGAGAGTGCAACACGCTTTACTCTGGGTGAAACAAAAGAAGAACTTTTGAGGGTCCTGGGACTGCAAGAGGAACAAGGAAGCTCACTGCAATTTCTTCGTAGAGGTTACAGGGTTAGCAGAATGCTACTTAGTGGGAAGAAGATGTGGAGTGGGAGGAATCTTCTGCTCAGCGTAATTGAGCAGCTCAGGGAAATGAATGCCGGTGTACCAACAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

150

Amino Acids

17.17

Weight (kDa)

8.83

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1995	PF09353	52 - 88	5.2e-06	Domain of unknown function (DUF1995)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AclI	AACGTT	1 cut(s)	98
AfaI	GTAC	2 cut(s)	127, 435
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	2 cut(s)	309, 412
AluI	AGCT	2 cut(s)	309, 412
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	176, 280
AsuHPI	GGTGA	2 cut(s)	124, 266
AvaII	GGWCC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	42, 200
BcgI	CGANNNNNNTGC	4 cut(s)	102, 136, 305, 339
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	410
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	176, 280
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	413
Bpu1102I	GCTNAGC	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	179, 283
Bse118I	RCCGGY	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	179, 283
BseMII	CTCAG	2 cut(s)	409, 427
BseXI	GCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	300
BsmI	GAATGC	2 cut(s)	354, 430
BsnI	GGCC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	442
Bsp1720I	GCTNAGC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	408, 426
BspDI	ATCGAT	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	179, 283
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	130
BstAPI	GCANNNNNTGC	2 cut(s)	190, 233
BstAUI	TGTACA	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	356, 395, 413
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 224, 233
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	176, 280
ClaI	ATCGAT	1 cut(s)	445
Csp6I	GTAC	2 cut(s)	126, 434
CviJI	RGCY	4 cut(s)	178, 203, 309, 412
CviKI_1	RGCY	4 cut(s)	178, 203, 309, 412
CviQI	GTAC	2 cut(s)	126, 434
DdeI	CTNAG	3 cut(s)	356, 395, 413
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	280
EcoO109I	RGGNCCY	2 cut(s)	176, 280
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaiI	YATR	2 cut(s)	65, 216
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	410
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	2 cut(s)	124, 266
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	173, 236, 292, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 224, 233
HpyF3I	CTNAG	3 cut(s)	356, 395, 413
HpySE526I	ACGT	1 cut(s)	98
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	442
LpnPI	CCDG	8 cut(s)	159, 170, 236, 269, 296, 322, 400, 442
Lsp1109I	GCAGC	1 cut(s)	421
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	3 cut(s)	88, 130, 332
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	6 cut(s)	153, 278, 314, 376, 379, 380
MluCI	AATT	3 cut(s)	6, 317, 402
MnlI	CCTC	5 cut(s)	145, 270, 289, 323, 375
MseI	TTAA	1 cut(s)	24
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	284
Mva1269I	GAATGC	2 cut(s)	354, 430
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	190, 224, 233
NdeII	GATC	1 cut(s)	442
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	130
PctI	GAATGC	2 cut(s)	354, 430
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	411
PpuMI	RGGWCCY	1 cut(s)	280
Psp1406I	AACGTT	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	176, 280
PspPPI	RGGWCCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	127, 435
RsaNI	GTAC	2 cut(s)	126, 434
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	2 cut(s)	176, 280
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	7 cut(s)	101, 119, 137, 189, 311, 334, 414
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	3 cut(s)	6, 317, 402
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	445
TasI	AATT	3 cut(s)	6, 317, 402
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	61, 153, 437
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.