pycom14g00680
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
442509 .. 442842
334 bp
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UTR
Exon/CDS
Intron
pycom14g00680.2

Sequence Viewer

Length: 294 bp
ATGAGAAGATTCTTCTTCATAAAAAATAAAAAAAAGAAAAAAACTGATGAGAAGAAACCTTCTGTCATAGATATCGAAGGCATCGGGGAAGTGGAAGTCGGTGTTCTGAGGATGTACCCGCATCTATTAGCTGAAGCCTATGAACTTAAAATGAGAATGATTGCCTATTGGAAGGTTGTCTTGAGGAGGCTTGTCGTTCAGGCAGGACTAGACGCAGTACCTCTCAAATGCGCACCCATTGTGTCGTCCTACAATGACAAGATCCGCCCTCTTCTGGATGCATTCAGCTGCTAA

Protein Analysis

98

Amino Acids

11.23

Weight (kDa)

9.7

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 232
AciI CCGC 2 cut(s) 119, 265
AclWI GGATC 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 116, 219
AfiI CCNNNNNNNGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 131, 288
AluI AGCT 2 cut(s) 131, 288
AlwI GGATC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 275
BfaI CTAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmsI GCATC 3 cut(s) 90, 130, 268
BpuEI CTTGAG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 274
BseGI GGATG 2 cut(s) 117, 283
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 274
BsmI GAATGC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 2 cut(s) 119, 265
BspCNI CTCAG 1 cut(s) 99
BspPI GGATC 1 cut(s) 256
BssMI GATC 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 117, 283
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BtsCI GGATG 2 cut(s) 117, 283
CfoI GCGC 1 cut(s) 233
CseI GACGC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 115, 218
CviJI RGCY 4 cut(s) 131, 137, 190, 288
CviKI_1 RGCY 4 cut(s) 131, 137, 190, 288
CviQI GTAC 2 cut(s) 115, 218
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EciI GGCGGA 1 cut(s) 254
Eco32I GATATC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 283
FaiI YATR 3 cut(s) 20, 68, 141
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FauI CCCGC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 2 cut(s) 124, 290
Fsp4HI GCNGC 1 cut(s) 289
FspAI RTGCGCAY 1 cut(s) 232
FspBI CTAG 1 cut(s) 209
FspI TGCGCA 1 cut(s) 232
GlaI GCGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 289
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 233
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 2 cut(s) 181, 275
HpyAV CCTTC 3 cut(s) 69, 71, 166
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 107
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 3 cut(s) 185, 189, 260
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 3 cut(s) 90, 130, 268
MaeI CTAG 1 cut(s) 209
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 5 cut(s) 4, 7, 18, 64, 263
MflI RGATCY 1 cut(s) 261
MnlI CCTC 5 cut(s) 102, 177, 180, 231, 279
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 281
NdeII GATC 1 cut(s) 261
NsbI TGCGCA 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 283
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 288
RsaI GTAC 2 cut(s) 116, 219
RsaNI GTAC 2 cut(s) 115, 218
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 261
SetI ASST 5 cut(s) 61, 133, 177, 223, 290
SfaNI GCATC 3 cut(s) 90, 130, 268
SgeI CNNG 9 cut(s) 97, 130, 193, 203, 212, 216, 221, 271, 287
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SsiI CCGC 2 cut(s) 119, 265
SspMI CTAG 1 cut(s) 209
TaqI TCGA 1 cut(s) 75
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 288
TspDTI ATGAA 2 cut(s) 7, 156
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.