pycom14g01060

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
N/A
Physical Location & Seq
Reverse (-)
754224 .. 755145
922 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
ATGGAGAAGGCCAACAAGGGAGACAATTCAGCAACCATGTCAGCTACTTCCTCATCGTTGGTGAAAATGTATGCAAGGTGTTTCCTCAAGAATAAGAAAAGCACGAAAAGCACCAATCCAATGGCGAGTGATACCGACACAACAACTACAATCGAGAACTTTGCCGCCTTTGAGCTACCTCTTCCAAGCTCGTTTGACACTCGTACACTATACCTTGCTGTAGCCATGAAACCGAGAGATATCATCATTTCCCACCCCACGACGTTGAGAGATAGGGCATCGATAGAAACTTCAGCGTTTTCCATGTTTCCCGTTAAAAGGACCAAGATTGTGTTGTACCAAAGCTCAAGACTCATAACGCCGGATGACATAGAAAGCTTGACGACATCCCAGAGATCAGTAAAAGCTAACATCGAGAAGCCTGTCCATGTTTCGGGGCATCCTCCGCACAGAATAAACAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.2

Weight (kDa)

9.79

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 165, 446
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 2 cut(s) 205, 338
AfiI CCNNNNNNNGG 2 cut(s) 318, 433
AluBI AGCT 7 cut(s) 44, 175, 189, 345, 378, 407, 465
AluI AGCT 7 cut(s) 44, 175, 189, 345, 378, 407, 465
Alw26I GTCTC 1 cut(s) 15
AoxI GGCC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BcoDI GTCTC 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 321
BmsI GCATC 2 cut(s) 287, 448
BpuEI CTTGAG 2 cut(s) 71, 331
Bsa29I ATCGAT 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 433
BseCI ATCGAT 1 cut(s) 281
BseGI GGATG 3 cut(s) 370, 386, 439
BseLI CCNNNNNNNGG 2 cut(s) 318, 433
BshFI GGCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 281
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 318, 433
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 395
BspACI CCGC 2 cut(s) 165, 446
BspANI GGCC 1 cut(s) 11
BspDI ATCGAT 1 cut(s) 281
BssMI GATC 1 cut(s) 395
Bst6I CTCTTC 1 cut(s) 186
BstF5I GGATG 3 cut(s) 370, 386, 439
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 395
BstMWI GCNNNNNNNGC 2 cut(s) 108, 445
BstSFI CTRYAG 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 281
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 281
BtsCI GGATG 3 cut(s) 370, 386, 439
Cfr13I GGNCC 1 cut(s) 321
ClaI ATCGAT 1 cut(s) 281
Csp6I GTAC 2 cut(s) 204, 337
CviAII CATG 4 cut(s) 37, 226, 304, 428
CviQI GTAC 2 cut(s) 204, 337
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 241
FaeI CATG 4 cut(s) 40, 229, 307, 431
FaiI YATR 8 cut(s) 38, 72, 211, 227, 305, 356, 371, 429
FatI CATG 4 cut(s) 36, 225, 303, 427
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 3 cut(s) 373, 377, 426
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 362
Hin1II CATG 4 cut(s) 40, 229, 307, 431
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 1 cut(s) 351
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 206
Hpy188III TCNNGA 4 cut(s) 88, 154, 348, 415
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 445
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 4 cut(s) 40, 229, 307, 431
Kzo9I GATC 1 cut(s) 395
LpnPI CCDG 3 cut(s) 375, 404, 435
LweI GCATC 2 cut(s) 287, 448
MaeII ACGT 1 cut(s) 263
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 1 cut(s) 173
MluCI AATT 1 cut(s) 25
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 4 cut(s) 61, 95, 189, 453
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 108, 445
NdeII GATC 1 cut(s) 395
NlaIII CATG 4 cut(s) 40, 229, 307, 431
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 321
RsaI GTAC 2 cut(s) 205, 338
RsaNI GTAC 2 cut(s) 204, 337
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 395
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 345
SfaNI GCATC 2 cut(s) 287, 448
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 86, 346
SmoI CTYRAG 2 cut(s) 86, 346
Sse9I AATT 1 cut(s) 25
SsiI CCGC 2 cut(s) 165, 446
TaiI ACGT 1 cut(s) 266
TaqI TCGA 3 cut(s) 153, 281, 414
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.