Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1352771 .. 1353790

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTATCATCCCTGTACCTGAGCAGCATATGTGTAAGTCATCATGTTTTCTCTTATGTGATTGGTAAAAGATGGATTTTGGTAGAGCTGGAGTTGCATCATAAGAAAACCAGCAGACGTATTCAGATGCTCACTTTTGGTAGTGAAGAGGCATGGTTGTACGATTATGGACGTATCTGCAAAGTCTGTCGTAAGCTGAAAGTAATTTTGTTAGACAATATGACACACATCAATGTATTGGTTGCTGCTGGTGTTATTTCTTTGCCTGTTCTTCAGGAAGGATGTCCATCATATTTGTCTTTGCATGGTCTTTGCATATTTGTCTTACGCTATGAGATGTGCTTCCACGAGAGGAAGATGACTGAGAAAGAGATCACTCCCATGGGTGGCTTCCCTTACCGTGGTGTGGTGAATGATGGTTACATTCAGAGCAATGAATGGTGTGTTGAACCTAAGAAAAGGAGAGTTAATCTTCAACAATCTCTTCTCAATCAGACTGTTCGTCTTGCTCTTAAGGATATCAAGCTCAGAACCATCTCTAAGGCTATAATTATTGGCAATGGTCCAATTGCTATAGTAGCTGCATTGGTTGAGAATCTTCTGGCAGGTTCCCTGGGAGTTGGCCCATTTTCTCCATTTGATAATGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 ko04130 ko04146 map03010 map04130 map04146

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

218

Amino Acids

24.43

Weight (kDa)

9.18

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	7 - 90	9.7e-06	Serine hydroxymethyltransferase
Ribosomal_L3	PF00297	119 - 184	7e-11	Ribosomal protein L3
MFS_5	PF05631	178 - 217	7.7e-07	Sugar-tranasporters, 12 TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	2 cut(s)	17, 161
AfiI	CCNNNNNNNGG	3 cut(s)	386, 401, 406
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	2 cut(s)	449, 476
AhdI	GACNNNNNGTC	1 cut(s)	501
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	4 cut(s)	88, 196, 526, 581
AluI	AGCT	4 cut(s)	88, 196, 526, 581
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	4 cut(s)	24, 245, 581, 647
AspS9I	GGNCC	2 cut(s)	563, 623
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	563
BauI	CACGAG	1 cut(s)	347
BbvI	GCAGC	4 cut(s)	36, 232, 568, 634
BccI	CCATC	4 cut(s)	66, 295, 410, 542
BciT130I	CCWGG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	573
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	596
BisI	GCNGC	4 cut(s)	25, 246, 582, 648
BlsI	GCNGC	4 cut(s)	26, 247, 583, 649
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	1 cut(s)	563
BmeRI	GACNNNNNGTC	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	563, 623
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	2 cut(s)	106, 117
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	381, 400, 612, 613
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 401, 406
Bse3DI	GCAATG	2 cut(s)	439, 565
Bse8I	GATNNNNATC	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	4 cut(s)	381, 400, 612, 613
BseGI	GGATG	2 cut(s)	8, 287
BseJI	GATNNNNATC	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	386, 401, 406
BseMI	GCAATG	2 cut(s)	439, 565
BseMII	CTCAG	3 cut(s)	11, 354, 541
BseXI	GCAGC	4 cut(s)	36, 232, 568, 634
BshFI	GGCC	1 cut(s)	624
BslI	CCNNNNNNNGG	3 cut(s)	386, 401, 406
BsnI	GGCC	1 cut(s)	624
Bsp143I	GATC	1 cut(s)	372
Bsp19I	CCATGG	1 cut(s)	381
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	3 cut(s)	12, 355, 540
BspLI	GGNNCC	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	596
BspTI	CTTAAG	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	439, 565
BssECI	CCNNGG	4 cut(s)	381, 400, 612, 613
BssMI	GATC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	401, 499
Bst6I	CTCTTC	2 cut(s)	141, 489
BstAFI	CTTAAG	1 cut(s)	512
BstDEI	CTNAG	5 cut(s)	20, 363, 453, 527, 540
BstDSI	CCRYGG	2 cut(s)	381, 400
BstF5I	GGATG	2 cut(s)	8, 287
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 578
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	36, 232, 568, 634
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	2 cut(s)	381, 400
BtsCI	GGATG	2 cut(s)	8, 287
BveI	ACCTGC	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	563, 623
Csp6I	GTAC	2 cut(s)	16, 160
CviAII	CATG	5 cut(s)	44, 153, 305, 382, 651
CviJI	RGCY	7 cut(s)	88, 196, 390, 526, 545, 581, 624
CviKI_1	RGCY	7 cut(s)	88, 196, 390, 526, 545, 581, 624
CviQI	GTAC	2 cut(s)	16, 160
DdeI	CTNAG	5 cut(s)	20, 363, 453, 527, 540
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
DriI	GACNNNNNGTC	1 cut(s)	501
Eam1104I	CTCTTC	2 cut(s)	141, 489
Eam1105I	GACNNNNNGTC	1 cut(s)	501
EarI	CTCTTC	2 cut(s)	141, 489
Eco130I	CCWWGG	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	5 cut(s)	47, 156, 308, 385, 654
FatI	CATG	5 cut(s)	43, 152, 304, 381, 650
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	4 cut(s)	25, 246, 582, 648
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	25, 246, 582, 648
GluI	GCNGC	4 cut(s)	25, 246, 582, 648
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	624
Hin1II	CATG	5 cut(s)	47, 156, 308, 385, 654
HinfI	GANTC	1 cut(s)	595
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	4 cut(s)	126, 429, 495, 530
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	401, 499
HpyCH4IV	ACGT	2 cut(s)	118, 172
HpyCH4V	TGCA	6 cut(s)	97, 180, 304, 315, 584, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 578
HpyF3I	CTNAG	5 cut(s)	20, 363, 453, 527, 540
HpySE526I	ACGT	2 cut(s)	118, 172
Hsp92II	CATG	5 cut(s)	47, 156, 308, 385, 654
Kzo9I	GATC	1 cut(s)	372
Lsp1109I	GCAGC	4 cut(s)	36, 232, 568, 634
LweI	GCATC	2 cut(s)	106, 117
MaeII	ACGT	2 cut(s)	118, 172
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	6 cut(s)	158, 263, 367, 464, 476, 590
MfeI	CAATTG	1 cut(s)	567
MluCI	AATT	3 cut(s)	204, 549, 567
MnlI	CCTC	2 cut(s)	142, 345
MseI	TTAA	2 cut(s)	468, 513
MslI	CAYNNNNRTG	2 cut(s)	231, 380
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	614
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	94, 578
NcoI	CCATGG	1 cut(s)	381
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	5 cut(s)	47, 156, 308, 385, 654
NlaIV	GGNNCC	1 cut(s)	610
PasI	CCCWGGG	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	26, 247, 583, 649
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	563, 623
RsaI	GTAC	2 cut(s)	17, 161
RsaNI	GTAC	2 cut(s)	16, 160
RseI	CAYNNNNRTG	2 cut(s)	231, 380
SaqAI	TTAA	2 cut(s)	468, 513
SatI	GCNGC	4 cut(s)	25, 246, 582, 648
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	2 cut(s)	563, 623
ScrFI	CCNGG	1 cut(s)	614
SetI	ASST	9 cut(s)	21, 90, 121, 175, 198, 454, 528, 583, 610
SfaNI	GCATC	2 cut(s)	106, 117
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	2 cut(s)	231, 380
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	204, 549, 567
StyD4I	CCNGG	1 cut(s)	612
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	401, 499
TaiI	ACGT	2 cut(s)	121, 175
TasI	AATT	3 cut(s)	204, 549, 567
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	2 cut(s)	468, 513
Tru9I	TTAA	2 cut(s)	468, 513
TseI	GCWGC	4 cut(s)	24, 245, 581, 647
TspDTI	ATGAA	1 cut(s)	450
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.