Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1598379 .. 1598573

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCCAAGGCCCAACATTGGCATCCACAGGTTTGTGTTTGTTCTCTTCAAGCAGAAACGAAGACAATCAATCAACCCACCTTCCTCAAGGGATTGCTTCAGCACTCGAAGCTTCGCGGCTGAAAATGACCTGGGTCTTCCTGTCGCTGCCGTTTACTTCAATGCGCAGAGAGAAGGTGCAGCAAGAAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

65

Amino Acids

7.35

Weight (kDa)

11.65

Isoelectric Point (pI)

91.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	165
AccII	CGCG	1 cut(s)	116
AciI	CCGC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	49, 160
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	146, 179
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	67, 128
BbvI	GCAGC	2 cut(s)	133, 191
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	193
BisI	GCNGC	3 cut(s)	117, 147, 180
BlsI	GCNGC	3 cut(s)	118, 148, 181
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	30
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	67, 128
BpuEI	CTTGAG	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	5, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	5, 130
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	133, 191
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	17
BsnI	GGCC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	5, 130
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	131
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	133, 191
BstV2I	GAAGAC	2 cut(s)	67, 128
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	21
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	9
CviJI	RGCY	3 cut(s)	10, 111, 119
CviKI_1	RGCY	3 cut(s)	10, 111, 119
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	117, 147, 180
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	117, 147, 180
FspBI	CTAG	1 cut(s)	193
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	117, 147, 180
HaeIII	GGCC	1 cut(s)	10
HhaI	GCGC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	90, 167
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HspAI	GCGC	1 cut(s)	164
LpnPI	CCDG	4 cut(s)	13, 116, 143, 153
Lsp1109I	GCAGC	2 cut(s)	133, 191
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	193
MboII	GAAGA	3 cut(s)	37, 72, 128
MnlI	CCTC	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	108
NsbI	TGCGCA	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	118, 148, 181
PshAI	GACNNNNGTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	9
SatI	GCNGC	3 cut(s)	117, 147, 180
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	32, 82, 113, 132, 178
SfaNI	GCATC	1 cut(s)	30
SgeI	CNNG	9 cut(s)	18, 40, 61, 99, 117, 127, 142, 143, 152
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	5
TaqI	TCGA	1 cut(s)	106
TauI	GCSGC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	146, 179
XspI	CTAG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.